Wall clock time and date at job start Sun Mar 29 2020 22:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47263 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47123 * 29.99826 * 3 2 1 6 6 H 1.48502 * 109.47383 * 149.99902 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38645 * 120.06257 * 95.00078 * 13 12 11 15 15 C 1.38818 * 117.97841 * 180.02562 * 14 13 12 16 16 C 1.38765 * 117.96174 * 359.97438 * 15 14 13 17 17 Cl 1.73595 * 120.09431 * 179.97438 * 16 15 14 18 18 N 1.32031 * 119.81574 * 0.02562 * 16 15 14 19 19 N 1.28345 * 122.16382 * 359.71127 * 18 16 15 20 20 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 21 21 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 22 22 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 23 23 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 24 24 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 25 25 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 26 26 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 27 27 H 1.07999 * 121.00815 * 0.02562 * 14 13 12 28 28 H 1.08008 * 121.01922 * 180.02562 * 15 14 13 29 29 H 1.09007 * 113.75652 * 270.36911 * 20 11 10 30 30 H 1.08993 * 113.76177 * 139.00817 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.6883 -4.4281 -4.2713 15 6 -0.2433 -4.7784 -5.2389 16 6 -0.9289 -5.9743 -5.0793 17 17 -2.1066 -6.4662 -6.2559 18 7 -0.6836 -6.7365 -4.0295 19 7 0.1815 -6.4139 -3.1381 20 6 2.1611 -3.7399 -0.0455 21 1 -0.4850 0.8400 -0.0004 22 1 0.4835 -2.5465 0.7729 23 1 -0.3212 -2.8279 -1.5258 24 1 1.3294 -2.4995 -2.2139 25 1 2.6375 -4.2949 -2.5327 26 1 2.3447 -5.8766 -1.7705 27 1 1.2500 -3.5087 -4.3466 28 1 -0.4282 -4.1402 -6.0904 29 1 3.1447 -3.5475 -0.4741 30 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877625781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:41 Heat of formation + Delta-G solvation = 84.507223 kcal Electronic energy + Delta-G solvation = -15848.755868 eV Core-core repulsion = 13092.590042 eV Total energy + Delta-G solvation = -2756.165826 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14402 -38.78253 -37.01107 -33.82488 -33.09551 -32.39035 -29.24861 -26.16617 -25.23771 -24.64377 -23.79825 -21.67943 -18.73379 -17.75011 -17.34594 -16.79528 -15.80427 -15.42935 -14.83404 -14.53712 -14.05412 -13.94984 -13.50208 -12.94069 -12.31917 -12.07076 -11.91515 -11.69361 -11.52971 -11.14079 -10.99347 -10.73534 -10.46608 -10.37627 -9.94343 -9.76062 -9.67442 -9.18767 -9.09778 -8.53766 -8.03807 -6.13097 -4.18770 0.64528 0.66749 1.48260 3.22079 3.30480 3.32662 3.34720 4.00255 4.31793 4.34701 4.45036 4.61824 4.83640 4.88215 5.17328 5.41650 5.46092 5.66020 5.84465 5.98426 6.01432 6.23657 6.32157 6.53673 6.62405 7.00624 7.02625 7.63864 7.78796 7.92027 8.26418 8.54582 8.84382 9.47034 10.96174 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.032571 B = 0.004738 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.457990 B = 5908.871351 C = 6404.234108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.008 3.992 11 N -0.482 5.482 12 C 0.071 3.929 13 C 0.095 3.905 14 C -0.094 4.094 15 C -0.106 4.106 16 C 0.104 3.896 17 Cl -0.017 7.017 18 N -0.232 5.232 19 N -0.206 5.206 20 C 0.001 3.999 21 H 0.262 0.738 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.059 0.941 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -7.835 -11.445 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.120 4.120 11 N -0.205 5.205 12 C -0.059 4.059 13 C -0.050 4.050 14 C -0.123 4.123 15 C -0.136 4.136 16 C -0.068 4.068 17 Cl 0.011 6.989 18 N -0.076 5.076 19 N -0.050 5.050 20 C -0.127 4.127 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.178 0.822 28 H 0.176 0.824 29 H 0.077 0.923 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.017 -9.666 -10.519 14.285 hybrid contribution 1.119 2.779 -1.440 3.323 sum 1.102 -6.887 -11.958 13.844 Atomic orbital electron populations 1.69962 1.06014 1.26848 1.49416 1.25013 0.94796 0.99166 0.94592 0.86625 0.79991 0.83452 0.78125 1.20682 1.21118 1.19768 1.21077 0.92799 0.90244 1.51767 0.92319 1.20298 0.93760 0.91072 0.92744 1.24198 1.00045 0.86233 1.01541 1.68788 1.26125 1.17282 1.08303 1.21516 0.92367 1.01179 0.90869 1.22971 0.95866 0.91207 0.94911 1.22480 0.96745 1.00463 0.92646 1.22194 0.95076 0.95460 1.00827 1.23462 0.95054 0.94070 0.94173 1.98406 1.55307 1.91852 1.53302 1.72963 1.09905 1.26392 0.98290 1.73122 1.00832 1.15228 1.15780 1.24127 0.95177 0.97786 0.95638 0.92795 0.92160 0.91531 0.92634 0.92140 0.89019 0.82213 0.82360 0.92262 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.52 -13.46 8.77 -34.44 -0.30 -13.76 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.04 0.96 3.60 -90.84 -0.33 0.64 16 10 C 0.01 0.18 6.70 -2.57 -0.02 0.16 16 11 N -0.48 -9.31 6.26 -239.48 -1.50 -10.81 16 12 C 0.07 1.11 5.17 -4.97 -0.03 1.09 16 13 C 0.10 1.49 6.03 -82.41 -0.50 0.99 16 14 C -0.09 -1.22 9.39 -39.22 -0.37 -1.59 16 15 C -0.11 -1.25 10.00 -39.17 -0.39 -1.64 16 16 C 0.10 1.42 7.37 -17.27 -0.13 1.29 16 17 Cl -0.02 -0.19 29.14 -51.86 -1.51 -1.70 16 18 N -0.23 -3.83 11.49 32.88 0.38 -3.45 16 19 N -0.21 -3.58 11.43 33.60 0.38 -3.19 16 20 C 0.00 0.02 7.53 -2.76 -0.02 0.00 16 21 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 22 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 23 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 24 H 0.06 1.14 7.56 -51.93 -0.39 0.75 16 25 H 0.06 0.86 7.61 -51.93 -0.39 0.47 16 26 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 27 H 0.16 1.75 7.91 -52.49 -0.42 1.33 16 28 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 29 H 0.06 1.09 7.74 -51.92 -0.40 0.69 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 280.03 15.07 4.22 4.22 Total: -1.00 -28.81 280.03 -7.75 -36.56 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.26 Total: -1.72 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.17 Total: -11.14 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.00 Total: -41.42 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.81 -7.75 -36.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877625781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.065 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds