Wall clock time and date at job start Sun Mar 29 2020 22:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76198 * 99.99999 * 2 1 4 4 N 1.32913 * 120.17686 * 0.02562 * 3 2 1 5 5 C 1.31995 * 119.97729 * 179.97438 * 4 3 2 6 6 C 1.38835 * 120.33957 * 359.97438 * 5 4 3 7 7 N 1.31732 * 120.35600 * 0.02562 * 6 5 4 8 8 C 1.33017 * 120.01201 * 359.97438 * 7 6 5 9 9 C 1.47700 * 120.16449 * 180.02562 * 8 7 6 10 10 O 1.21572 * 120.00199 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99724 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99677 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46866 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00179 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99903 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00129 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00122 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46975 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47437 * 120.00132 * 17 15 13 20 20 H 1.48503 * 109.47017 * 239.99881 * 17 15 13 21 21 H 1.08996 * 109.47202 * 59.99918 * 1 2 3 22 22 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46755 * 299.99783 * 1 2 3 24 24 H 1.08000 * 119.83438 * 179.97438 * 5 4 3 25 25 H 1.07994 * 119.82657 * 179.72094 * 6 5 4 26 26 H 0.96996 * 119.99997 * 359.97438 * 11 9 8 27 27 H 1.08995 * 109.47449 * 299.99942 * 12 11 9 28 28 H 1.09000 * 109.47341 * 60.00056 * 12 11 9 29 29 H 0.97005 * 120.00676 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1005 2.5927 0.0005 5 6 1.3342 3.8918 0.0010 6 6 2.6377 4.3698 0.0016 7 7 3.6541 3.5318 0.0011 8 6 3.4347 2.2199 0.0005 9 6 4.5718 1.2773 0.0006 10 8 4.3680 0.0788 0.0006 11 7 5.8356 1.7459 0.0006 12 6 6.9634 0.8110 0.0011 13 6 8.2569 1.5843 0.0004 14 1 8.2404 2.6641 -0.0009 15 6 9.4613 0.9132 0.0002 16 7 9.4814 -0.4018 0.0012 17 14 11.0646 1.8717 0.0000 18 1 10.7711 3.3273 -0.0006 19 1 11.8489 1.5249 1.2123 20 1 11.8486 1.5248 -1.2126 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 0.5073 4.5865 0.0010 25 1 2.8194 5.4344 -0.0026 26 1 5.9982 2.7021 0.0002 27 1 6.9151 0.1839 0.8913 28 1 6.9154 0.1831 -0.8886 29 1 10.3287 -0.8740 0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879799247.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:44 Heat of formation + Delta-G solvation = 10.643886 kcal Electronic energy + Delta-G solvation = -15714.399864 eV Core-core repulsion = 12957.074790 eV Total energy + Delta-G solvation = -2757.325074 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.04454 -38.59014 -34.63128 -34.16082 -32.33427 -31.65237 -28.85844 -27.52106 -25.25768 -24.70793 -22.58240 -20.22316 -18.32282 -17.96922 -17.60611 -16.08981 -15.42149 -15.29157 -15.05590 -14.63028 -14.18670 -14.00495 -13.55076 -13.41283 -12.95581 -12.47093 -12.00841 -11.91974 -11.69195 -11.44873 -11.02134 -10.91678 -10.71814 -10.24507 -9.94694 -9.51540 -9.37150 -8.93580 -8.76011 -8.02462 -7.46638 -6.16530 -4.23085 0.35653 0.89400 1.52169 2.34820 3.04103 3.24873 3.31925 3.35452 3.66554 3.88855 4.12883 4.20646 4.33885 4.62765 4.97793 5.00735 5.19985 5.22503 5.22789 5.45019 5.82363 6.08123 6.94759 7.23579 7.30723 7.47977 7.50405 7.67967 7.94894 8.54292 8.70927 8.96931 9.42893 10.93690 Molecular weight = 253.06amu Principal moments of inertia in cm(-1) A = 0.034164 B = 0.005166 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.391079 B = 5419.205876 C = 6218.152174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 S 0.080 5.920 3 C 0.090 3.910 4 N -0.452 5.452 5 C 0.084 3.916 6 C 0.031 3.969 7 N -0.393 5.393 8 C 0.052 3.948 9 C 0.548 3.452 10 O -0.520 6.520 11 N -0.681 5.681 12 C 0.246 3.754 13 C -0.543 4.543 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.175 0.825 25 H 0.175 0.825 26 H 0.402 0.598 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 7.718 -0.005 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.366 4.366 2 S 0.322 5.678 3 C -0.160 4.160 4 N -0.171 5.171 5 C -0.083 4.083 6 C -0.136 4.136 7 N -0.110 5.110 8 C -0.098 4.098 9 C 0.330 3.670 10 O -0.399 6.399 11 N -0.328 5.328 12 C 0.126 3.874 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.100 0.900 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.192 0.808 25 H 0.193 0.807 26 H 0.236 0.764 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.138 5.515 -0.004 17.054 hybrid contribution 0.004 2.282 -0.002 2.282 sum -16.134 7.797 -0.006 17.919 Atomic orbital electron populations 1.23901 1.01008 1.05684 1.06021 1.87529 1.00426 0.93049 1.86831 1.24519 0.91977 1.01991 0.97524 1.68929 1.32095 1.03383 1.12706 1.23966 0.98183 0.92512 0.93599 1.23731 0.89214 1.01109 0.99532 1.68394 1.35054 1.01956 1.05635 1.22206 0.93554 0.91712 1.02353 1.17548 0.82963 0.86899 0.79614 1.90690 1.83136 1.14315 1.51778 1.46355 1.05227 1.12129 1.69104 1.19263 0.81307 0.88621 0.98182 1.21252 0.90271 0.93421 1.53160 0.91675 1.24939 0.99407 0.94955 0.94652 1.69979 1.26747 1.06571 1.48958 0.86347 0.82787 0.79990 0.77731 1.19570 1.20788 1.20795 0.89959 0.88340 0.89955 0.80839 0.80747 0.76376 0.94947 0.94953 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 9.66 101.05 0.98 -1.22 15 2 S 0.08 1.25 19.62 -107.50 -2.11 -0.86 15 3 C 0.09 1.46 7.01 -16.23 -0.11 1.34 15 4 N -0.45 -6.10 9.32 -11.48 -0.11 -6.21 15 5 C 0.08 0.86 11.22 -17.26 -0.19 0.67 15 6 C 0.03 0.34 11.21 -17.37 -0.19 0.15 15 7 N -0.39 -6.09 9.70 -9.47 -0.09 -6.19 15 8 C 0.05 0.92 6.77 -82.64 -0.56 0.36 15 9 C 0.55 11.71 7.79 -12.39 -0.10 11.62 15 10 O -0.52 -12.20 13.77 5.30 0.07 -12.13 15 11 N -0.68 -15.23 5.54 -62.48 -0.35 -15.57 15 12 C 0.25 6.56 5.43 -5.20 -0.03 6.54 15 13 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 15 14 H 0.07 1.69 7.60 -52.49 -0.40 1.29 15 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 16 N -0.89 -25.97 13.29 55.43 0.74 -25.23 15 17 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 15 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 21 H 0.08 0.89 8.13 -51.92 -0.42 0.47 15 22 H 0.10 0.90 8.14 -51.92 -0.42 0.48 15 23 H 0.08 0.89 8.13 -51.92 -0.42 0.47 15 24 H 0.17 0.99 8.06 -52.49 -0.42 0.57 15 25 H 0.18 1.20 8.06 -52.49 -0.42 0.77 15 26 H 0.40 8.23 7.67 -40.82 -0.31 7.92 15 27 H 0.03 0.94 8.14 -51.93 -0.42 0.52 15 28 H 0.03 0.94 8.14 -51.93 -0.42 0.51 15 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 LS Contribution 276.29 15.07 4.16 4.16 Total: -1.00 -31.92 276.29 -6.13 -38.05 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -2.80 Total: 2.08 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.63 Total: 5.95 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.19 Total: -53.20 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.11 Total: -0.86 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.92 -6.13 -38.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879799247.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.697 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds