Wall clock time and date at job start Sun Mar 29 2020 22:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46905 * 2 1 4 4 C 1.50696 * 109.47277 * 239.99693 * 2 1 3 5 5 H 1.08001 * 119.99603 * 239.99809 * 4 2 1 6 6 C 1.37875 * 120.00152 * 59.99939 * 4 2 1 7 7 N 1.31516 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99881 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47548 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46576 * 120.00078 * 8 6 4 11 11 H 1.48502 * 109.47037 * 239.99676 * 8 6 4 12 12 N 1.46508 * 109.47262 * 119.99439 * 2 1 3 13 13 N 1.40098 * 119.99880 * 270.00570 * 12 2 1 14 14 C 1.29807 * 119.99994 * 179.97438 * 13 12 2 15 15 C 1.47365 * 120.00342 * 179.97438 * 14 13 12 16 16 C 1.39729 * 119.75240 * 179.97438 * 15 14 13 17 17 C 1.38240 * 119.05843 * 180.02562 * 16 15 14 18 18 C 1.38981 * 118.53569 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 120.29685 * 180.02562 * 18 17 16 20 20 C 1.38363 * 119.41265 * 359.97438 * 18 17 16 21 21 N 1.31744 * 120.91062 * 0.02562 * 20 18 17 22 22 H 1.08994 * 109.47419 * 300.00463 * 1 2 3 23 23 H 1.09003 * 109.46906 * 60.00640 * 1 2 3 24 24 H 1.09001 * 109.46923 * 180.02562 * 1 2 3 25 25 H 0.96999 * 120.00174 * 180.02562 * 7 6 4 26 26 H 0.96997 * 119.99892 * 90.00095 * 12 2 1 27 27 H 1.08007 * 119.99413 * 0.02562 * 14 13 12 28 28 H 1.07998 * 120.46880 * 0.04321 * 16 15 14 29 29 H 1.07999 * 120.73608 * 179.97438 * 17 16 15 30 30 H 1.07994 * 119.54956 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 3.1475 -2.2865 -3.6036 10 1 1.1679 -1.5869 -4.8163 11 1 3.1474 -0.1860 -4.8160 12 7 2.0184 -0.6905 1.1963 13 7 2.2518 0.0301 2.3748 14 6 2.6840 -0.5817 3.4349 15 6 2.9301 0.1763 4.6744 16 6 3.3948 -0.4877 5.8126 17 6 3.6203 0.2373 6.9678 18 6 3.3752 1.6053 6.9516 19 17 3.6434 2.5600 8.3765 20 6 2.9165 2.1996 5.7894 21 7 2.7092 1.4869 4.7010 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.7090 1.1612 -3.4844 26 1 2.1801 -1.6466 1.1723 27 1 2.8641 -1.6464 3.4081 28 1 3.5756 -1.5522 5.7901 29 1 3.9791 -0.2484 7.8632 30 1 2.7257 3.2625 5.7742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884441193.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:48 Heat of formation + Delta-G solvation = 66.710584 kcal Electronic energy + Delta-G solvation = -15113.321062 eV Core-core repulsion = 12356.383516 eV Total energy + Delta-G solvation = -2756.937546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07140 -36.84460 -36.41533 -34.14978 -32.47615 -31.97689 -30.40360 -27.36439 -25.29561 -24.20254 -23.45665 -20.83395 -20.21716 -17.40357 -17.08033 -16.48273 -15.73177 -15.33330 -14.91481 -14.35870 -14.06063 -13.48438 -13.16995 -12.74320 -12.54744 -12.33983 -12.06182 -11.47701 -11.35151 -11.08558 -10.87402 -10.62925 -10.29451 -10.25268 -9.92167 -9.65373 -9.43963 -9.12285 -8.93668 -8.54411 -7.01406 -6.17690 -4.26591 0.70081 1.16538 1.94586 2.77841 3.21220 3.28641 3.31511 3.59501 3.95998 4.30482 4.34833 4.65055 4.75270 4.92035 5.15080 5.30635 5.56118 5.74053 5.83147 5.99725 6.41169 6.63187 6.84569 6.96114 7.09529 7.52195 7.70627 7.78672 7.96515 8.07406 8.21512 8.79647 9.17951 9.40284 10.88343 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.054624 B = 0.003374 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.474124 B = 8296.434037 C = 8481.055722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.293 3.707 3 H 0.046 0.954 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.610 5.610 13 N -0.142 5.142 14 C -0.040 4.040 15 C 0.217 3.783 16 C -0.158 4.158 17 C -0.062 4.062 18 C -0.111 4.111 19 Cl -0.068 7.068 20 C 0.124 3.876 21 N -0.450 5.450 22 H 0.014 0.986 23 H 0.092 0.908 24 H 0.026 0.974 25 H 0.265 0.735 26 H 0.370 0.630 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -1.479 17.861 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.191 3.809 3 H 0.064 0.936 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.346 5.346 13 N 0.041 4.959 14 C -0.246 4.246 15 C 0.079 3.921 16 C -0.180 4.180 17 C -0.089 4.089 18 C -0.141 4.141 19 Cl -0.040 7.040 20 C -0.036 4.036 21 N -0.160 5.160 22 H 0.033 0.967 23 H 0.110 0.890 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.206 0.794 27 H 0.133 0.867 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.672 0.096 16.489 16.893 hybrid contribution 0.880 -1.997 0.267 2.199 sum 4.552 -1.901 16.756 17.467 Atomic orbital electron populations 1.22201 0.98683 0.99282 1.00810 1.18661 0.90386 0.93809 0.78008 0.93618 1.21246 1.32448 1.13387 0.90118 0.92065 1.24864 0.94775 0.94977 0.98997 1.69900 1.35903 1.22433 1.23926 0.86352 0.78621 0.79516 0.82377 1.19760 1.20806 1.20774 1.49380 1.70228 1.08070 1.06968 1.74217 1.00586 1.27492 0.93602 1.23140 1.13418 0.96415 0.91581 1.19606 0.91698 0.88911 0.91837 1.21979 1.02257 1.01566 0.92232 1.21334 0.96819 0.91772 0.98932 1.22105 1.08320 0.93308 0.90366 1.98359 1.95168 1.71844 1.38630 1.22834 0.93756 1.00665 0.86307 1.68201 1.14697 1.06899 1.26251 0.96661 0.88985 0.95457 0.92517 0.79367 0.86710 0.83794 0.83998 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 37.16 0.35 -3.35 16 2 C 0.29 7.43 3.23 -69.08 -0.22 7.21 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.53 -14.14 8.74 -34.44 -0.30 -14.44 16 5 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.61 -13.31 6.10 -5.88 -0.04 -13.35 16 13 N -0.14 -2.94 11.22 32.14 0.36 -2.58 16 14 C -0.04 -0.66 10.75 -14.69 -0.16 -0.82 16 15 C 0.22 3.27 6.74 -83.12 -0.56 2.71 16 16 C -0.16 -1.75 9.83 -39.02 -0.38 -2.13 16 17 C -0.06 -0.63 9.96 -39.31 -0.39 -1.02 16 18 C -0.11 -1.24 6.35 -39.26 -0.25 -1.49 16 19 Cl -0.07 -0.67 28.98 -51.86 -1.50 -2.17 16 20 C 0.12 1.62 10.97 -17.54 -0.19 1.43 16 21 N -0.45 -7.38 10.06 -9.89 -0.10 -7.48 16 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.37 7.28 8.58 -182.60 -1.57 5.71 16 27 H 0.12 1.56 8.02 -52.48 -0.42 1.14 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 287.08 15.07 4.33 4.33 Total: -1.00 -29.08 287.08 -7.94 -37.01 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.38 Total: 2.79 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.21 Total: -10.20 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.85 Total: -47.28 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.08 -7.94 -37.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441193.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.722 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds