Wall clock time and date at job start Sun Mar 29 2020 23:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47021 * 224.01204 * 3 2 1 5 5 N 1.46498 * 112.85145 * 304.04300 * 4 3 2 6 6 C 1.34777 * 120.00051 * 293.93556 * 5 4 3 7 7 O 1.21282 * 120.00289 * 354.96371 * 6 5 4 8 8 C 1.50705 * 119.99790 * 174.69191 * 6 5 4 9 9 S 1.81005 * 109.46901 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00172 * 179.97438 * 9 8 6 11 11 H 1.08009 * 119.99530 * 359.97438 * 10 9 8 12 12 C 1.38791 * 120.00125 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00252 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99991 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46845 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46962 * 120.00002 * 14 12 10 17 17 H 1.48499 * 109.47183 * 240.00002 * 14 12 10 18 18 C 1.53784 * 113.69192 * 75.31092 * 4 3 2 19 19 C 1.53788 * 87.07928 * 139.99330 * 18 4 3 20 20 C 1.53784 * 87.08319 * 334.56765 * 19 18 4 21 21 H 4.44647 * 5.63392 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.46705 * 104.01477 * 3 2 1 23 23 H 1.08991 * 109.47158 * 344.01440 * 3 2 1 24 24 H 0.97002 * 120.00369 * 113.93351 * 5 4 3 25 25 H 1.09000 * 109.47181 * 299.99814 * 8 6 5 26 26 H 1.08994 * 109.47082 * 60.00042 * 8 6 5 27 27 H 0.97005 * 120.00347 * 180.02562 * 13 12 10 28 28 H 1.08996 * 113.61577 * 254.53818 * 18 4 3 29 29 H 1.08997 * 113.60932 * 25.44299 * 18 4 3 30 30 H 1.09006 * 113.60903 * 220.01923 * 19 18 4 31 31 H 1.08992 * 113.61312 * 89.12307 * 19 18 4 32 32 H 1.09004 * 113.61390 * 270.88657 * 20 19 18 33 33 H 1.08994 * 113.61594 * 139.98131 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0383 1.0022 5 7 2.6320 2.3822 0.7454 6 6 2.9821 3.0384 -0.3785 7 8 3.8006 2.5561 -1.1324 8 6 2.3519 4.3687 -0.7017 9 16 3.0229 4.9906 -2.2635 10 6 2.1388 6.5092 -2.3933 11 1 1.4326 6.7902 -1.6259 12 6 2.3490 7.3437 -3.4822 13 7 3.2084 7.0005 -4.4182 14 14 1.4111 8.9533 -3.6202 15 1 0.5124 9.1045 -2.4477 16 1 2.3722 10.0847 -3.6557 17 1 0.6036 8.9505 -4.8664 18 6 3.0250 0.5964 2.4694 19 6 4.4040 1.2360 2.7026 20 6 4.6790 0.9997 1.2082 21 1 -1.0502 -0.0001 -0.0003 22 1 3.0092 0.2497 -0.9971 23 1 3.0098 -0.9870 0.2830 24 1 2.0334 2.7999 1.3843 25 1 1.2726 4.2468 -0.7933 26 1 2.5710 5.0779 0.0964 27 1 3.3556 7.5840 -5.1791 28 1 2.2167 1.0940 3.0051 29 1 3.0178 -0.4857 2.6004 30 1 5.0486 0.6553 3.3624 31 1 4.3557 2.2899 2.9764 32 1 5.1240 0.0278 0.9944 33 1 5.2059 1.8229 0.7256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886788044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:49 Heat of formation + Delta-G solvation = 8.965392 kcal Electronic energy + Delta-G solvation = -16057.626781 eV Core-core repulsion = 13403.769266 eV Total energy + Delta-G solvation = -2653.857516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53252 -39.06019 -34.72759 -34.60131 -34.17677 -30.87869 -29.65989 -27.67810 -26.68080 -24.29336 -22.02687 -20.20947 -19.83312 -18.98596 -17.79232 -16.99750 -16.89360 -16.66119 -16.11947 -15.73795 -15.12563 -15.06059 -14.75310 -14.54663 -14.10535 -13.59745 -13.22072 -13.17220 -12.92491 -12.63375 -12.52602 -12.07333 -11.86641 -11.70504 -11.44672 -11.17034 -11.14332 -11.07853 -10.64563 -10.28780 -9.95227 -8.67436 -8.36100 -6.13948 1.25805 1.40415 1.45801 1.57174 1.63605 1.92001 1.97031 2.24434 2.28877 2.98169 3.29748 3.35736 3.57623 3.78424 3.91527 3.96963 4.07411 4.27669 4.47082 4.53853 4.61729 4.79589 4.84307 4.89675 5.05848 5.12347 5.16027 5.21478 5.38602 5.40472 5.71451 6.18573 6.52982 6.75834 7.05354 7.28224 8.73473 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.004826 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.986096 B = 5799.963733 C = 6071.805678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.204 4.204 3 C -0.016 4.016 4 C 0.147 3.853 5 N -0.694 5.694 6 C 0.538 3.462 7 O -0.553 6.553 8 C -0.131 4.131 9 S -0.146 6.146 10 C -0.548 4.548 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.273 1.273 18 C -0.116 4.116 19 C -0.131 4.131 20 C -0.146 4.146 21 H 0.241 0.759 22 H 0.065 0.935 23 H 0.121 0.879 24 H 0.413 0.587 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.271 0.729 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -12.863 16.683 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.204 4.204 3 C -0.054 4.054 4 C 0.061 3.939 5 N -0.348 5.348 6 C 0.324 3.676 7 O -0.430 6.430 8 C -0.282 4.282 9 S 0.081 5.919 10 C -0.695 4.695 11 H 0.099 0.901 12 C -0.190 4.190 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.199 1.199 18 C -0.154 4.154 19 C -0.168 4.168 20 C -0.184 4.184 21 H 0.258 0.742 22 H 0.083 0.917 23 H 0.138 0.862 24 H 0.250 0.750 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.354 -13.638 15.294 20.626 hybrid contribution -1.632 1.790 0.322 2.444 sum -3.986 -11.847 15.616 20.003 Atomic orbital electron populations 1.25569 0.96711 1.00380 1.00285 1.23299 0.94944 1.01015 1.01151 1.19064 0.85251 1.00583 1.00478 1.21449 0.95011 0.81366 0.96092 1.45445 1.50509 1.16705 1.22117 1.19940 0.81073 0.85540 0.81049 1.90669 1.33879 1.68603 1.49853 1.23379 1.04181 0.97523 1.03103 1.85518 1.57792 1.24351 1.24217 1.23239 1.28527 1.06107 1.11664 0.90125 1.26116 0.96217 1.02649 0.94048 1.70185 1.34716 1.38964 1.10934 0.84906 0.77957 0.76377 0.78704 1.18123 1.19790 1.19866 1.23208 0.98159 1.02871 0.91113 1.22805 0.97328 1.01315 0.95375 1.23312 0.94593 1.02869 0.97606 0.74236 0.91650 0.86152 0.75024 0.87976 0.87529 0.91951 0.89828 0.86650 0.89085 0.90693 0.87709 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.74 19.25 74.32 1.43 -3.31 16 2 C -0.20 -5.16 12.83 31.13 0.40 -4.76 16 3 C -0.02 -0.40 5.01 28.79 0.14 -0.25 16 4 C 0.15 3.31 0.54 4.13 0.00 3.31 16 5 N -0.69 -18.37 4.73 -420.53 -1.99 -20.36 16 6 C 0.54 20.22 7.40 87.66 0.65 20.87 16 7 O -0.55 -25.28 13.75 -3.04 -0.04 -25.33 16 8 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 9 S -0.15 -8.22 20.57 -56.49 -1.16 -9.39 16 10 C -0.55 -31.74 9.50 67.95 0.65 -31.09 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.83 5.49 84.86 0.47 1.30 16 13 N -0.91 -56.47 13.22 21.65 0.29 -56.19 16 14 Si 1.00 44.00 29.55 68.60 2.03 46.02 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 C -0.12 -1.66 7.24 31.12 0.23 -1.44 16 19 C -0.13 -2.08 7.99 31.12 0.25 -1.83 16 20 C -0.15 -3.26 6.95 31.12 0.22 -3.04 16 21 H 0.24 3.55 7.80 -4.41 -0.03 3.52 16 22 H 0.07 2.08 7.17 -2.38 -0.02 2.07 16 23 H 0.12 2.15 8.10 -2.39 -0.02 2.13 16 24 H 0.41 8.48 8.67 -92.71 -0.80 7.68 16 25 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 26 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 27 H 0.27 15.54 8.31 -92.70 -0.77 14.76 16 28 H 0.08 1.04 8.09 -2.39 -0.02 1.03 16 29 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 33 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 Total: -1.00 -76.29 303.38 4.29 -72.00 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.30 Total: 18.39 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.87 Total: -25.15 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -1.70 Total: -76.55 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.04 Total: -25.33 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.39 kcal Total: -76.29 4.29 -72.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886788044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.964 kcal (2) G-P(sol) polarization free energy of solvation -76.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds