Wall clock time and date at job start Sun Mar 29 2020 23:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 H 1.09004 * 109.69807 * 167.60207 * 3 2 1 5 5 C 1.53194 * 109.59085 * 287.95613 * 3 2 1 6 6 C 1.53038 * 109.31101 * 65.15110 * 5 3 2 7 7 C 1.53045 * 109.53516 * 61.36880 * 6 5 3 8 8 C 1.53185 * 109.31342 * 298.63219 * 7 6 5 9 9 N 1.46924 * 109.58849 * 47.24650 * 3 2 1 10 10 C 1.34787 * 120.63033 * 114.09306 * 9 3 2 11 11 O 1.21282 * 119.99956 * 359.72115 * 10 9 3 12 12 C 1.50697 * 119.99793 * 179.72182 * 10 9 3 13 13 S 1.80996 * 109.46855 * 180.02562 * 12 10 9 14 14 C 1.76196 * 100.00216 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99957 * 359.97438 * 14 13 12 16 16 C 1.38799 * 120.00554 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99594 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00183 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47465 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46827 * 120.00075 * 18 16 14 21 21 H 1.48502 * 109.47293 * 239.99753 * 18 16 14 22 22 H 4.19103 * 14.98333 * 0.02562 * 4 2 1 23 23 H 1.09005 * 109.49558 * 305.20302 * 5 3 2 24 24 H 1.09001 * 109.49919 * 185.10988 * 5 3 2 25 25 H 1.08994 * 109.46487 * 301.34997 * 6 5 3 26 26 H 1.08999 * 109.45649 * 181.38281 * 6 5 3 27 27 H 1.08998 * 109.49685 * 178.67744 * 7 6 5 28 28 H 1.09001 * 109.49668 * 58.58262 * 7 6 5 29 29 H 1.09001 * 109.59106 * 294.85078 * 8 7 6 30 30 H 1.08998 * 109.70436 * 174.49150 * 8 7 6 31 31 H 1.08997 * 109.47228 * 299.99525 * 12 10 9 32 32 H 1.08997 * 109.47248 * 60.00068 * 12 10 9 33 33 H 0.97004 * 119.99793 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0129 1.0031 -0.2203 5 6 3.1598 -0.4441 1.3730 6 6 2.7584 -1.9007 1.6161 7 6 3.3974 -2.7926 0.5491 8 6 2.8863 -2.3745 -0.8331 9 7 3.1389 -0.9388 -1.0164 10 6 3.8150 -0.4925 -2.0937 11 8 4.0172 0.6952 -2.2335 12 6 4.3197 -1.4693 -3.1243 13 16 5.1809 -0.5694 -4.4375 14 6 5.6503 -1.9150 -5.4736 15 1 5.3866 -2.9256 -5.1988 16 6 6.3599 -1.6765 -6.6423 17 7 6.6817 -0.4447 -6.9771 18 14 6.8582 -3.1032 -7.7403 19 1 6.3788 -4.3766 -7.1454 20 1 6.2537 -2.9273 -9.0852 21 1 8.3376 -3.1399 -7.8635 22 1 -1.0500 -0.0010 0.0007 23 1 2.7234 0.1876 2.1468 24 1 4.2459 -0.3564 1.4008 25 1 1.6735 -1.9921 1.5635 26 1 3.1015 -2.2120 2.6027 27 1 3.1302 -3.8325 0.7366 28 1 4.4813 -2.6828 0.5847 29 1 1.8159 -2.5687 -0.9011 30 1 3.4098 -2.9390 -1.6047 31 1 5.0083 -2.1709 -2.6534 32 1 3.4781 -2.0160 -3.5495 33 1 7.1780 -0.2780 -7.7937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890647379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:11 Heat of formation + Delta-G solvation = -9.077658 kcal Electronic energy + Delta-G solvation = -16175.475310 eV Core-core repulsion = 13520.835389 eV Total energy + Delta-G solvation = -2654.639921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37056 -38.64786 -34.60217 -34.57719 -33.89833 -31.72523 -30.49193 -27.70730 -26.38743 -24.46640 -22.19838 -21.03206 -19.66489 -18.59469 -18.28544 -16.93679 -16.87213 -16.64753 -15.94497 -15.69906 -15.25230 -15.12883 -14.57561 -14.38925 -14.33999 -13.66432 -13.57893 -13.16547 -12.91664 -12.66486 -12.53754 -12.10387 -11.97462 -11.72613 -11.65154 -11.50672 -11.16356 -11.04632 -10.83007 -10.27758 -9.86418 -8.69127 -8.35340 -6.14200 1.14602 1.38266 1.41725 1.47840 1.54658 1.69246 1.85762 2.26042 2.38817 2.99142 3.21821 3.34244 3.65325 3.85512 3.92111 4.02124 4.07485 4.22249 4.38663 4.45238 4.48630 4.67587 4.78913 4.89154 5.00953 5.05068 5.12097 5.16811 5.41462 5.41854 5.49552 6.19148 6.21856 6.62294 7.04572 7.06043 8.74360 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037428 B = 0.004897 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.922523 B = 5716.162571 C = 6023.879533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.231 4.231 3 C 0.242 3.758 4 H 0.091 0.909 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.131 4.131 8 C 0.097 3.903 9 N -0.600 5.600 10 C 0.535 3.465 11 O -0.565 6.565 12 C -0.122 4.122 13 S -0.151 6.151 14 C -0.545 4.545 15 H 0.084 0.916 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.273 1.273 22 H 0.252 0.748 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 -7.560 17.925 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.232 4.232 3 C 0.139 3.861 4 H 0.109 0.891 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.169 4.169 8 C -0.024 4.024 9 N -0.333 5.333 10 C 0.323 3.677 11 O -0.443 6.443 12 C -0.273 4.273 13 S 0.076 5.924 14 C -0.693 4.693 15 H 0.102 0.898 16 C -0.191 4.191 17 N -0.549 5.549 18 Si 0.822 3.178 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.199 1.199 22 H 0.268 0.732 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.236 -5.716 17.610 21.155 hybrid contribution 0.045 -1.486 -0.859 1.717 sum -10.191 -7.202 16.751 20.888 Atomic orbital electron populations 1.25752 0.96545 0.98311 0.97948 1.23401 0.94768 1.02461 1.02544 1.18029 0.84177 0.94310 0.89557 0.89133 1.21892 1.01503 0.98718 0.93360 1.21510 1.01003 0.93043 0.99596 1.21927 1.00925 1.01112 0.92889 1.22056 1.02000 0.78562 0.99807 1.48182 1.54809 1.08873 1.21459 1.20228 0.77109 0.88562 0.81817 1.90672 1.58231 1.18684 1.76711 1.23360 1.04080 1.01451 0.98383 1.85607 1.70480 1.14575 1.21747 1.23224 1.41982 0.94161 1.09905 0.89837 1.26139 0.94764 0.99653 0.98516 1.70196 1.37945 1.21722 1.25004 0.84887 0.78037 0.77566 0.77336 1.17919 1.19960 1.19853 0.73158 0.88935 0.90896 0.91434 0.89382 0.88010 0.91660 0.90414 0.89005 0.87082 0.87596 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 19.25 74.32 1.43 -1.86 16 2 C -0.23 -5.69 11.32 31.12 0.35 -5.34 16 3 C 0.24 6.50 3.07 43.17 0.13 6.63 16 4 H 0.09 2.93 7.00 -2.38 -0.02 2.91 16 5 C -0.12 -2.22 5.53 30.67 0.17 -2.06 16 6 C -0.11 -1.69 5.72 30.62 0.18 -1.51 16 7 C -0.13 -2.06 6.08 30.67 0.19 -1.88 16 8 C 0.10 2.09 6.02 86.36 0.52 2.61 16 9 N -0.60 -17.77 2.66 -805.14 -2.14 -19.91 16 10 C 0.53 21.36 7.72 87.65 0.68 22.03 16 11 O -0.56 -27.64 15.27 -3.04 -0.05 -27.68 16 12 C -0.12 -5.04 4.50 71.24 0.32 -4.72 16 13 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 14 C -0.54 -31.31 9.50 67.95 0.65 -30.67 16 15 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 16 C 0.01 0.80 5.49 84.86 0.47 1.26 16 17 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 18 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H 0.25 2.70 7.80 -4.42 -0.03 2.66 16 23 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.00 7.34 -2.39 -0.02 0.98 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.52 7.97 -2.39 -0.02 1.50 16 30 H 0.09 1.95 5.93 -2.39 -0.01 1.94 16 31 H 0.11 4.11 7.70 -2.40 -0.02 4.09 16 32 H 0.11 4.01 7.94 -2.40 -0.02 3.99 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -76.52 295.30 5.13 -71.39 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.09 Total: 11.89 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 5.08 Total: -15.49 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -1.85 Total: -76.01 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.05 Total: -27.68 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -76.52 5.13 -71.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890647379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.312 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds