Wall clock time and date at job start Sun Mar 29 2020 23:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38090 * 120.47342 * 2 1 4 4 N 1.31843 * 120.94027 * 179.97438 * 3 2 1 5 5 C 1.31994 * 122.02384 * 359.97438 * 4 3 2 6 6 F 1.35100 * 119.57857 * 179.97438 * 5 4 3 7 7 C 1.38479 * 120.83450 * 359.97438 * 5 4 3 8 8 C 1.39767 * 118.96855 * 359.78515 * 7 5 4 9 9 C 1.48057 * 120.90990 * 180.23000 * 8 7 5 10 10 O 1.21433 * 119.99880 * 186.11065 * 9 8 7 11 11 O 1.34664 * 120.00398 * 6.11254 * 9 8 7 12 12 C 1.45196 * 117.00352 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46777 * 30.00338 * 12 11 9 14 14 C 1.52999 * 109.47188 * 269.99926 * 12 11 9 15 15 C 1.50703 * 109.47006 * 149.99820 * 12 11 9 16 16 H 1.08003 * 119.99889 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99788 * 180.02562 * 15 12 11 18 18 N 1.31507 * 120.00230 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99718 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47268 * 60.00060 * 19 17 15 21 21 H 1.48496 * 109.46882 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46854 * 299.99952 * 19 17 15 23 23 H 1.08996 * 109.47601 * 96.28302 * 1 2 3 24 24 H 1.09001 * 109.46967 * 336.27831 * 1 2 3 25 25 H 1.09009 * 109.47065 * 216.28312 * 1 2 3 26 26 H 1.07997 * 119.52490 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.51406 * 180.02562 * 7 5 4 28 28 H 1.08992 * 109.47285 * 299.99824 * 14 12 11 29 29 H 1.08994 * 109.47071 * 60.00622 * 14 12 11 30 30 H 1.08999 * 109.46723 * 179.97438 * 14 12 11 31 31 H 0.97002 * 120.00175 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2072 1.1901 0.0000 4 7 3.5256 1.2009 0.0005 5 6 4.2346 0.0876 0.0015 6 9 5.5839 0.1562 0.0015 7 6 3.6130 -1.1499 0.0027 8 6 2.2164 -1.2058 0.0073 9 6 1.5073 -2.5055 0.0137 10 8 0.2983 -2.5380 -0.0943 11 8 2.2031 -3.6516 0.1394 12 6 1.4423 -4.8882 0.1383 13 1 0.5444 -4.7618 -0.4665 14 6 1.0453 -5.2441 1.5724 15 6 2.2851 -5.9960 -0.4392 16 1 3.2920 -5.7912 -0.7717 17 6 1.7707 -7.2710 -0.5430 18 7 0.5444 -7.5203 -0.1386 19 14 2.8157 -8.6444 -1.2583 20 1 4.0384 -8.8170 -0.4335 21 1 2.0371 -9.9089 -1.2607 22 1 3.2020 -8.2989 -2.6499 23 1 -0.3634 -0.1125 -1.0214 24 1 -0.3633 0.9409 0.4134 25 1 -0.3634 -0.8285 0.6082 26 1 1.6672 2.1254 0.0004 27 1 4.1981 -2.0575 0.0039 28 1 1.9432 -5.3705 2.1772 29 1 0.4357 -4.4429 1.9901 30 1 0.4738 -6.1722 1.5715 31 1 0.1827 -8.4174 -0.2113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892689871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:59 Heat of formation + Delta-G solvation = -96.532468 kcal Electronic energy + Delta-G solvation = -18177.368492 eV Core-core repulsion = 14952.723070 eV Total energy + Delta-G solvation = -3224.645422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.04714 -40.67557 -39.16651 -36.05805 -33.51648 -33.37713 -32.22059 -29.67052 -27.27561 -25.46117 -25.20106 -22.88888 -21.64365 -20.18637 -18.32905 -17.57574 -16.62806 -16.38480 -16.19876 -15.40437 -15.32971 -15.22497 -14.54115 -14.19883 -13.76745 -13.75864 -13.07851 -12.54151 -12.44762 -12.23722 -12.08055 -11.90714 -11.34923 -11.13060 -10.92307 -10.49364 -10.37715 -10.27555 -10.06923 -9.69469 -9.53991 -9.03910 -8.92017 -8.57524 -6.26580 -4.34226 0.47818 0.74712 2.82650 3.16866 3.22283 3.26359 3.32069 3.43281 3.57575 4.24038 4.32705 4.61637 4.64021 5.02136 5.07611 5.24662 5.47427 5.59000 5.62138 5.73555 5.98636 6.27013 6.41607 6.53899 6.77797 6.78179 6.98821 7.40102 7.46950 7.60450 7.78582 8.01744 8.40207 8.74509 9.31534 10.80774 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028024 B = 0.005575 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.894985 B = 5020.891950 C = 5776.514637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 C 0.125 3.875 4 N -0.496 5.496 5 C 0.288 3.712 6 F -0.110 7.110 7 C -0.132 4.132 8 C -0.045 4.045 9 C 0.496 3.504 10 O -0.497 6.497 11 O -0.346 6.346 12 C 0.217 3.783 13 H 0.050 0.950 14 C -0.156 4.156 15 C -0.525 4.525 16 H 0.069 0.931 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.913 3.087 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.174 0.826 27 H 0.166 0.834 28 H 0.038 0.962 29 H 0.017 0.983 30 H 0.101 0.899 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 13.265 0.960 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.091 4.091 3 C -0.033 4.033 4 N -0.210 5.210 5 C 0.135 3.865 6 F -0.089 7.089 7 C -0.153 4.153 8 C -0.054 4.054 9 C 0.340 3.660 10 O -0.387 6.387 11 O -0.262 6.262 12 C 0.165 3.835 13 H 0.067 0.933 14 C -0.213 4.213 15 C -0.563 4.563 16 H 0.088 0.912 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.740 3.260 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.191 0.809 27 H 0.184 0.816 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.120 0.880 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.990 13.785 0.950 13.960 hybrid contribution 0.346 -1.546 -0.338 1.620 sum 2.336 12.238 0.613 12.475 Atomic orbital electron populations 1.21026 0.88292 1.03794 1.04324 1.21185 0.99028 0.91965 0.96923 1.22399 0.87192 0.97744 0.95931 1.66821 1.09635 1.31094 1.13482 1.17941 0.78826 0.89514 1.00237 1.91634 1.26971 1.96893 1.93449 1.22256 0.94892 0.98772 0.99415 1.19573 0.92608 0.92438 1.00802 1.20703 0.85762 0.85313 0.74254 1.90743 1.14758 1.87797 1.45445 1.86545 1.43264 1.15775 1.80629 1.20755 0.92252 0.75398 0.95092 0.93255 1.22180 1.00077 1.02396 0.96694 1.20965 1.00908 0.92194 1.42215 0.91244 1.24876 0.95336 0.98466 0.95137 1.69875 1.14580 1.22011 1.46113 0.86306 0.79888 0.80164 0.79650 1.19862 1.20960 1.19934 0.89927 0.91528 0.88258 0.80887 0.81615 0.94272 0.96431 0.88039 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.85 36.00 0.32 -1.06 16 2 C -0.09 -1.16 5.93 -104.06 -0.62 -1.78 16 3 C 0.12 1.42 10.83 -17.60 -0.19 1.23 16 4 N -0.50 -6.78 10.35 -13.65 -0.14 -6.92 16 5 C 0.29 4.09 8.41 -17.39 -0.15 3.94 16 6 F -0.11 -1.55 17.29 2.25 0.04 -1.51 16 7 C -0.13 -1.94 9.68 -38.92 -0.38 -2.32 16 8 C -0.05 -0.72 5.91 -104.67 -0.62 -1.34 16 9 C 0.50 9.86 7.84 34.76 0.27 10.13 16 10 O -0.50 -10.56 12.77 -19.21 -0.25 -10.81 16 11 O -0.35 -7.83 9.24 -40.39 -0.37 -8.20 16 12 C 0.22 5.58 2.56 -27.88 -0.07 5.51 16 13 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 14 C -0.16 -3.79 9.33 37.16 0.35 -3.44 16 15 C -0.52 -14.25 8.90 -34.44 -0.31 -14.56 16 16 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 19 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 25 H 0.10 1.42 5.92 -51.92 -0.31 1.11 16 26 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.17 2.36 7.72 -52.49 -0.41 1.95 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 2.65 6.07 -51.93 -0.32 2.33 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -28.93 278.89 -5.45 -34.38 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.05 Total: -0.78 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.49 Total: -30.79 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.62 Total: -19.01 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.93 -5.45 -34.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.150 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds