Wall clock time and date at job start Sun Mar 29 2020 22:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48500 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47236 * 300.00536 * 3 2 1 6 6 H 1.48496 * 109.46771 * 60.00746 * 3 2 1 7 7 C 1.37886 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99783 * 156.54996 * 7 2 1 9 9 C 1.50696 * 119.99896 * 336.54744 * 7 2 1 10 10 C 1.53010 * 115.55118 * 324.19302 * 9 7 2 11 11 N 1.46497 * 109.47118 * 281.18324 * 10 9 7 12 12 C 1.39046 * 119.99960 * 185.06848 * 11 10 9 13 13 N 1.32622 * 120.10364 * 5.08431 * 12 11 10 14 14 C 1.32267 * 119.93196 * 179.97438 * 13 12 11 15 15 C 1.38136 * 120.13091 * 0.02562 * 14 13 12 16 16 N 1.32290 * 120.20718 * 359.97438 * 15 14 13 17 17 C 1.32014 * 120.07064 * 0.02562 * 16 15 14 18 18 Cl 1.73600 * 120.06358 * 180.02562 * 17 16 15 19 19 C 1.52993 * 117.51817 * 109.89591 * 9 7 2 20 20 C 1.53001 * 60.00351 * 107.48144 * 19 9 7 21 21 H 0.97001 * 119.99613 * 5.03950 * 1 2 3 22 22 H 1.09002 * 109.46875 * 161.17948 * 10 9 7 23 23 H 1.09000 * 109.46755 * 41.18396 * 10 9 7 24 24 H 0.97006 * 120.00124 * 5.06171 * 11 10 9 25 25 H 1.08000 * 119.92948 * 180.02562 * 14 13 12 26 26 H 1.08003 * 119.89125 * 180.26916 * 15 14 13 27 27 H 1.09003 * 117.49997 * 214.97236 * 19 9 7 28 28 H 1.08999 * 117.50087 * 359.97438 * 19 9 7 29 29 H 1.09003 * 117.49611 * 252.51460 * 20 19 9 30 30 H 1.08994 * 117.51765 * 107.47735 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1942 -0.0005 8 1 3.0177 -1.2326 -0.3728 9 6 1.3444 -2.4455 0.5183 10 6 0.4042 -2.2503 1.7096 11 7 1.1924 -2.1196 2.9375 12 6 0.5523 -2.0385 4.1692 13 7 -0.7642 -2.1802 4.2453 14 6 -1.3695 -2.1029 5.4188 15 6 -0.6333 -1.8744 6.5651 16 7 0.6801 -1.7323 6.4953 17 6 1.2925 -1.8079 5.3283 18 17 3.0162 -1.6220 5.2371 19 6 0.9783 -3.5262 -0.5009 20 6 2.1492 -3.7454 0.4592 21 1 -0.4849 0.8368 -0.0738 22 1 -0.2594 -3.1110 1.7935 23 1 -0.1886 -1.3478 1.5605 24 1 2.1609 -2.0898 2.8913 25 1 -2.4415 -2.2187 5.4808 26 1 -1.1311 -1.8164 7.5218 27 1 0.0676 -4.0982 -0.3228 28 1 1.2145 -3.3321 -1.5471 29 1 3.1561 -3.6955 0.0446 30 1 2.0092 -4.4613 1.2691 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893647423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:06 Heat of formation + Delta-G solvation = 70.778999 kcal Electronic energy + Delta-G solvation = -16283.718977 eV Core-core repulsion = 13526.957851 eV Total energy + Delta-G solvation = -2756.761126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66829 -37.32353 -36.46138 -34.93837 -33.18602 -32.32975 -29.78672 -26.26503 -25.44948 -24.00095 -22.62762 -21.22013 -19.38587 -17.85932 -17.10478 -16.69550 -16.18269 -15.09593 -14.75039 -14.55409 -14.07255 -13.56735 -13.12549 -12.87913 -12.35587 -11.85262 -11.79543 -11.29223 -11.13250 -11.10092 -10.97415 -10.71303 -10.53294 -10.35621 -9.68688 -9.52612 -9.25648 -8.87437 -8.84563 -8.19171 -7.28708 -6.23961 -4.18881 1.08870 1.53528 2.05403 3.18548 3.30198 3.33624 3.55698 3.97539 4.26784 4.53676 4.62244 4.81475 5.06694 5.34512 5.43443 5.46432 5.90633 6.21368 6.31967 6.43329 6.55817 6.59656 6.79355 6.93649 7.23072 7.34450 7.45636 7.62306 7.83310 7.87284 8.26675 8.36926 8.74774 9.37156 10.78680 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.007872 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.492330 B = 3556.218827 C = 3819.328158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.882 3.118 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.504 4.504 8 H 0.065 0.935 9 C 0.036 3.964 10 C 0.150 3.850 11 N -0.672 5.672 12 C 0.390 3.610 13 N -0.490 5.490 14 C 0.115 3.885 15 C -0.037 4.037 16 N -0.397 5.397 17 C 0.043 3.957 18 Cl -0.032 7.032 19 C -0.189 4.189 20 C -0.210 4.210 21 H 0.265 0.735 22 H 0.041 0.959 23 H 0.116 0.884 24 H 0.413 0.587 25 H 0.170 0.830 26 H 0.166 0.834 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -3.575 9.256 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.126 4.126 3 Si 0.709 3.291 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.035 3.965 10 C 0.028 3.972 11 N -0.298 5.298 12 C 0.145 3.855 13 N -0.214 5.214 14 C -0.048 4.048 15 C -0.198 4.198 16 N -0.112 5.112 17 C -0.135 4.135 18 Cl -0.004 7.004 19 C -0.228 4.228 20 C -0.248 4.248 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.134 0.866 24 H 0.252 0.748 25 H 0.187 0.813 26 H 0.183 0.817 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.026 -3.444 9.035 9.723 hybrid contribution 0.887 0.863 -0.039 1.238 sum -0.139 -2.581 8.996 9.360 Atomic orbital electron populations 1.69920 1.06264 1.27247 1.46267 1.24944 0.94556 0.99215 0.93906 0.86696 0.80866 0.83680 0.77886 1.19373 1.20950 1.20594 1.20476 0.99762 0.90612 1.43160 0.91677 1.19154 0.95658 0.88353 0.93321 1.21381 0.92868 1.03265 0.79706 1.45236 1.09807 1.72128 1.02582 1.19018 0.89120 0.90487 0.86865 1.68288 1.06777 1.19012 1.27347 1.23553 1.01438 0.92015 0.87762 1.23056 0.88689 1.07864 1.00231 1.67406 1.11129 1.07346 1.25332 1.21832 0.88127 1.12934 0.90580 1.98371 1.08191 1.96078 1.97745 1.22938 0.96841 1.06332 0.96698 1.22894 0.96035 1.03150 1.02690 0.92498 0.94059 0.86633 0.74830 0.81299 0.81693 0.91525 0.90023 0.90402 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.01 11.23 55.43 0.62 -22.39 16 2 C 0.08 2.04 5.01 -17.81 -0.09 1.95 16 3 Si 0.88 20.28 29.60 -169.99 -5.03 15.24 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.50 -12.92 8.96 -34.44 -0.31 -13.23 16 8 H 0.07 1.68 7.92 -52.49 -0.42 1.27 16 9 C 0.04 0.84 1.72 -155.66 -0.27 0.57 16 10 C 0.15 3.37 5.37 -4.04 -0.02 3.35 16 11 N -0.67 -13.64 5.63 -60.26 -0.34 -13.98 16 12 C 0.39 7.45 7.48 -154.67 -1.16 6.29 16 13 N -0.49 -8.91 9.72 -12.21 -0.12 -9.03 16 14 C 0.12 1.60 11.21 -17.40 -0.20 1.41 16 15 C -0.04 -0.50 11.21 -17.39 -0.19 -0.69 16 16 N -0.40 -6.57 10.48 -10.01 -0.10 -6.67 16 17 C 0.04 0.77 7.31 -17.02 -0.12 0.65 16 18 Cl -0.03 -0.52 27.79 -51.86 -1.44 -1.96 16 19 C -0.19 -4.11 9.88 -26.73 -0.26 -4.38 16 20 C -0.21 -4.30 9.93 -26.73 -0.27 -4.56 16 21 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 22 H 0.04 0.91 7.93 -51.93 -0.41 0.50 16 23 H 0.12 2.96 5.51 -51.93 -0.29 2.67 16 24 H 0.41 8.18 7.17 -40.82 -0.29 7.88 16 25 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.17 1.56 8.06 -52.48 -0.42 1.13 16 27 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 28 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -27.55 279.35 -8.17 -35.72 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.08 Total: 7.49 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.89 Total: -8.64 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.06 Total: -52.07 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.44 Total: -1.96 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.55 -8.17 -35.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893647423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.498 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds