Wall clock time and date at job start Sun Mar 29 2020 23:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47148 * 300.00122 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99913 * 3 2 1 7 7 C 1.37871 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.52989 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47090 * 179.97438 * 10 9 7 12 12 O 1.21373 * 119.99905 * 0.02562 * 11 10 9 13 13 N 1.34319 * 119.99866 * 180.02562 * 11 10 9 14 14 O 1.41605 * 119.99734 * 180.02562 * 13 11 10 15 15 C 1.35794 * 113.99777 * 180.02562 * 14 13 11 16 16 C 1.38805 * 120.04117 * 269.71945 * 15 14 13 17 17 C 1.38133 * 119.95672 * 179.77319 * 16 15 14 18 18 C 1.38462 * 120.03963 * 0.50698 * 17 16 15 19 19 F 1.35102 * 119.95453 * 179.72394 * 18 17 16 20 20 C 1.38460 * 120.08449 * 359.74822 * 18 17 16 21 21 C 1.38127 * 120.03968 * 0.02562 * 20 18 17 22 22 H 0.97005 * 120.00027 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46974 * 59.99510 * 9 7 2 24 24 H 1.08993 * 109.46700 * 299.99884 * 9 7 2 25 25 H 1.09000 * 109.47099 * 60.00218 * 10 9 7 26 26 H 1.08993 * 109.47772 * 299.99859 * 10 9 7 27 27 H 0.96999 * 120.00326 * 0.02562 * 13 11 10 28 28 H 1.07997 * 120.02172 * 0.02562 * 16 15 14 29 29 H 1.08008 * 119.97618 * 180.23353 * 17 16 15 30 30 H 1.08005 * 119.98185 * 179.97438 * 20 18 17 31 31 H 1.08003 * 120.01975 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2780 -4.9671 0.0011 13 7 2.1634 -6.1303 0.0018 14 8 1.4553 -7.3567 0.0018 15 6 2.2535 -8.4552 0.0031 16 6 2.6582 -9.0215 -1.1979 17 6 3.4740 -10.1362 -1.1946 18 6 3.8795 -10.6949 0.0056 19 9 4.6728 -11.7884 0.0068 20 6 3.4725 -10.1346 1.2046 21 6 2.6605 -9.0172 1.2053 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 2.8718 -3.6042 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 3.1333 -6.1303 0.0022 28 1 2.3388 -8.5884 -2.1342 29 1 3.7922 -10.5748 -2.1290 30 1 3.7894 -10.5720 2.1399 31 1 2.3429 -8.5806 2.1407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898575357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:32 Heat of formation + Delta-G solvation = -51.155492 kcal Electronic energy + Delta-G solvation = -17157.663215 eV Core-core repulsion = 13934.985486 eV Total energy + Delta-G solvation = -3222.677729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.33745 -40.09124 -38.79776 -36.88402 -33.51819 -32.39882 -31.66897 -30.83516 -29.23406 -25.68229 -23.58747 -22.82766 -21.91601 -19.95553 -18.84875 -18.03242 -17.07076 -16.98045 -16.11300 -15.91815 -15.42805 -15.07531 -14.65414 -14.47097 -14.14924 -14.04453 -13.42789 -13.18420 -12.79975 -12.43968 -12.22547 -12.06858 -11.23842 -11.18901 -10.97036 -10.62518 -10.04479 -9.74017 -9.62919 -9.56733 -9.16312 -8.84837 -8.81731 -8.36288 -5.99907 -4.05056 0.27071 0.73560 2.18946 3.15322 3.27684 3.30926 3.38312 3.41191 3.77141 4.20555 4.29253 4.42988 4.45050 4.78982 4.87978 5.31942 5.35346 5.42572 5.48593 5.62103 5.65918 5.92673 6.08425 6.08853 6.27527 6.72393 7.11716 7.61437 7.70302 7.78518 8.01557 8.31983 8.70136 9.03221 9.58906 11.10959 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.054222 B = 0.003234 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.274924 B = 8657.230700 C = 8862.195145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.036 3.964 10 C -0.113 4.113 11 C 0.518 3.482 12 O -0.513 6.513 13 N -0.600 5.600 14 O -0.103 6.103 15 C 0.036 3.964 16 C -0.077 4.077 17 C -0.151 4.151 18 C 0.111 3.889 19 F -0.136 7.136 20 C -0.150 4.150 21 C -0.077 4.077 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.404 0.596 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.424 -20.588 0.008 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.154 4.154 11 C 0.307 3.693 12 O -0.385 6.385 13 N -0.311 5.311 14 O -0.094 6.094 15 C -0.010 4.010 16 C -0.097 4.097 17 C -0.169 4.169 18 C 0.091 3.909 19 F -0.115 7.115 20 C -0.169 4.169 21 C -0.097 4.097 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.244 0.756 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.110 -20.500 0.008 22.433 hybrid contribution 1.134 0.370 0.001 1.193 sum 10.244 -20.130 0.008 22.587 Atomic orbital electron populations 1.70008 1.06073 1.26609 1.49946 1.25026 0.94841 0.99299 0.95207 0.86509 0.79965 0.83705 0.77614 1.19713 1.20995 1.20999 1.21206 0.93006 0.90748 1.51713 0.92381 1.18974 0.93165 0.88970 0.99074 1.21939 1.00867 0.89372 1.03204 1.22049 0.89494 0.82902 0.74905 1.90742 1.14189 1.86033 1.47540 1.48728 1.07388 0.94708 1.80311 1.89256 1.19462 1.04735 1.95949 1.19058 0.98417 0.90864 0.92622 1.21535 0.94328 0.94929 0.98894 1.21102 1.00500 0.97773 0.97561 1.17831 0.92944 0.85411 0.94685 1.91525 1.71392 1.51103 1.97430 1.21098 1.00546 0.97709 0.97580 1.21538 0.94363 0.94914 0.98883 0.92904 0.95481 0.95469 0.89558 0.89549 0.75614 0.83784 0.83901 0.83903 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.93 4.26 -27.89 -0.12 0.82 16 10 C -0.11 -2.18 5.63 -27.89 -0.16 -2.33 16 11 C 0.52 10.02 7.96 -11.19 -0.09 9.93 16 12 O -0.51 -12.60 16.39 -12.85 -0.21 -12.81 16 13 N -0.60 -8.89 6.32 31.15 0.20 -8.69 16 14 O -0.10 -1.59 10.98 -13.66 -0.15 -1.74 16 15 C 0.04 0.41 5.81 -39.16 -0.23 0.18 16 16 C -0.08 -0.72 9.99 -39.41 -0.39 -1.11 16 17 C -0.15 -1.21 10.02 -39.54 -0.40 -1.60 16 18 C 0.11 0.95 7.30 -39.42 -0.29 0.67 16 19 F -0.14 -1.24 17.27 2.25 0.04 -1.20 16 20 C -0.15 -1.21 10.02 -39.54 -0.40 -1.60 16 21 C -0.08 -0.72 9.99 -39.41 -0.39 -1.11 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 24 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 25 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.40 4.39 8.51 -40.82 -0.35 4.04 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 289.92 15.07 4.37 4.37 Total: -1.00 -34.37 289.92 -6.18 -40.55 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.27 Total: -0.97 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.87 Total: -9.49 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.93 Total: -34.93 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.36 Total: -14.55 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.37 -6.18 -40.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898575357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.608 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds