Wall clock time and date at job start Sun Mar 29 2020 23:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47148 * 300.00122 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99913 * 3 2 1 7 7 C 1.37871 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.52989 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47090 * 179.97438 * 10 9 7 12 12 O 1.21373 * 119.99905 * 0.02562 * 11 10 9 13 13 N 1.34319 * 119.99866 * 180.02562 * 11 10 9 14 14 O 1.41605 * 119.99734 * 180.02562 * 13 11 10 15 15 C 1.35794 * 113.99777 * 180.02562 * 14 13 11 16 16 C 1.38805 * 120.04117 * 269.71945 * 15 14 13 17 17 C 1.38133 * 119.95672 * 179.77319 * 16 15 14 18 18 C 1.38462 * 120.03963 * 0.50698 * 17 16 15 19 19 F 1.35102 * 119.95453 * 179.72394 * 18 17 16 20 20 C 1.38460 * 120.08449 * 359.74822 * 18 17 16 21 21 C 1.38127 * 120.03968 * 0.02562 * 20 18 17 22 22 H 0.97005 * 120.00027 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46974 * 59.99510 * 9 7 2 24 24 H 1.08993 * 109.46700 * 299.99884 * 9 7 2 25 25 H 1.09000 * 109.47099 * 60.00218 * 10 9 7 26 26 H 1.08993 * 109.47772 * 299.99859 * 10 9 7 27 27 H 0.96999 * 120.00326 * 0.02562 * 13 11 10 28 28 H 1.07997 * 120.02172 * 0.02562 * 16 15 14 29 29 H 1.08008 * 119.97618 * 180.23353 * 17 16 15 30 30 H 1.08005 * 119.98185 * 179.97438 * 20 18 17 31 31 H 1.08003 * 120.01975 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2780 -4.9671 0.0011 13 7 2.1634 -6.1303 0.0018 14 8 1.4553 -7.3567 0.0018 15 6 2.2535 -8.4552 0.0031 16 6 2.6582 -9.0215 -1.1979 17 6 3.4740 -10.1362 -1.1946 18 6 3.8795 -10.6949 0.0056 19 9 4.6728 -11.7884 0.0068 20 6 3.4725 -10.1346 1.2046 21 6 2.6605 -9.0172 1.2053 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 2.8718 -3.6042 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 3.1333 -6.1303 0.0022 28 1 2.3388 -8.5884 -2.1342 29 1 3.7922 -10.5748 -2.1290 30 1 3.7894 -10.5720 2.1399 31 1 2.3429 -8.5806 2.1407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898575357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:31 Heat of formation + Delta-G solvation = -73.268620 kcal Electronic energy + Delta-G solvation = -17158.622112 eV Core-core repulsion = 13934.985486 eV Total energy + Delta-G solvation = -3223.636626 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.03912 -41.10715 -40.13321 -37.97645 -35.55316 -33.87239 -32.61185 -32.35253 -30.14711 -27.60945 -24.27484 -24.04484 -23.39580 -21.48910 -19.91133 -18.82819 -18.74950 -17.86081 -17.65605 -16.73833 -16.58879 -16.54586 -16.43877 -15.45863 -15.12286 -14.98018 -14.68014 -14.26532 -14.25678 -13.94299 -13.28628 -13.24444 -13.20881 -12.82685 -12.43129 -12.00512 -11.92607 -11.64388 -11.27406 -11.05957 -10.55694 -10.29916 -10.09905 -9.78034 -8.15686 -6.29614 -0.57173 0.06992 1.15152 1.46051 1.46813 1.60156 1.63445 2.43843 2.49220 3.08083 3.18138 3.32787 3.63911 3.77382 3.86644 4.11252 4.19347 4.46643 4.54650 4.66239 4.80158 4.94541 4.95993 5.03042 5.21415 5.50441 5.53907 5.63583 5.87201 5.95811 6.17986 6.39419 6.89329 7.32227 7.40842 8.97266 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.054222 B = 0.003234 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.274924 B = 8657.230700 C = 8862.195145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.250 1.250 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.039 3.961 10 C -0.101 4.101 11 C 0.522 3.478 12 O -0.579 6.579 13 N -0.578 5.578 14 O -0.125 6.125 15 C 0.005 3.995 16 C -0.075 4.075 17 C -0.144 4.144 18 C 0.112 3.888 19 F -0.137 7.137 20 C -0.144 4.144 21 C -0.075 4.075 22 H 0.262 0.738 23 H -0.015 1.015 24 H -0.015 1.015 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.425 0.575 28 H 0.150 0.850 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.551 -21.587 0.009 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.173 1.173 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.100 0.900 9 C 0.001 3.999 10 C -0.141 4.141 11 C 0.311 3.689 12 O -0.457 6.457 13 N -0.288 5.288 14 O -0.117 6.117 15 C -0.040 4.040 16 C -0.095 4.095 17 C -0.162 4.162 18 C 0.092 3.908 19 F -0.115 7.115 20 C -0.163 4.163 21 C -0.095 4.095 22 H 0.071 0.929 23 H 0.003 0.997 24 H 0.004 0.996 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.269 0.731 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.184 0.816 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.326 -21.547 0.008 24.824 hybrid contribution 0.218 0.456 0.001 0.505 sum 12.543 -21.092 0.009 24.540 Atomic orbital electron populations 1.70191 1.08368 1.27736 1.51576 1.26142 0.95695 1.03997 0.94738 0.85259 0.79428 0.78082 0.77369 1.17326 1.20863 1.20871 1.21726 0.94201 0.91217 1.50552 0.90042 1.18756 0.93804 0.92205 0.95144 1.21676 0.99251 0.87005 1.06178 1.21864 0.88483 0.84238 0.74290 1.90720 1.16820 1.87229 1.50902 1.48185 1.08120 0.94674 1.77815 1.89282 1.20937 1.05295 1.96186 1.19329 1.00225 0.90245 0.94191 1.21587 0.94188 0.95210 0.98465 1.21303 0.99473 0.96961 0.98512 1.18007 0.92532 0.85171 0.95120 1.91532 1.71393 1.51157 1.97453 1.21300 0.99521 0.96896 0.98533 1.21589 0.94220 0.95202 0.98450 0.92905 0.99657 0.99645 0.86421 0.86413 0.73098 0.83246 0.81580 0.81585 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.29 21.44 0.28 -58.72 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.09 4.26 29.85 0.13 2.22 16 10 C -0.10 -3.81 5.63 29.85 0.17 -3.64 16 11 C 0.52 20.39 7.96 87.73 0.70 21.09 16 12 O -0.58 -29.87 16.39 14.21 0.23 -29.64 16 13 N -0.58 -16.59 6.32 -173.97 -1.10 -17.69 16 14 O -0.13 -3.83 10.98 36.47 0.40 -3.43 16 15 C 0.01 0.11 5.81 22.54 0.13 0.24 16 16 C -0.07 -1.25 9.99 22.38 0.22 -1.03 16 17 C -0.14 -1.91 10.02 22.30 0.22 -1.68 16 18 C 0.11 1.59 7.30 22.38 0.16 1.76 16 19 F -0.14 -2.09 17.27 44.97 0.78 -1.32 16 20 C -0.14 -1.91 10.02 22.30 0.22 -1.68 16 21 C -0.07 -1.26 9.99 22.38 0.22 -1.03 16 22 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 23 H -0.02 -0.93 8.10 -2.39 -0.02 -0.95 16 24 H -0.01 -0.92 8.10 -2.39 -0.02 -0.94 16 25 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 26 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 27 H 0.43 8.31 8.51 -92.71 -0.79 7.52 16 28 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -78.38 289.92 5.87 -72.52 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.37 Total: 6.04 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 2.88 Total: -13.22 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -0.82 Total: -76.41 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: 0.63 Total: -33.07 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -78.38 5.87 -72.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898575357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.750 kcal (2) G-P(sol) polarization free energy of solvation -78.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds