Wall clock time and date at job start Sun Mar 29 2020 23:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 C 1.33851 * 124.51292 * 89.99707 * 5 4 2 7 7 C 1.37442 * 115.10709 * 180.02562 * 6 5 4 8 8 C 1.36772 * 113.27925 * 0.02562 * 7 6 5 9 9 C 1.46460 * 125.46369 * 180.02562 * 8 7 6 10 10 O 1.21744 * 119.99915 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00072 * 180.02562 * 9 8 7 12 12 C 1.36880 * 119.99901 * 179.97438 * 11 9 8 13 13 H 1.07993 * 120.00582 * 359.97438 * 12 11 9 14 14 C 1.39007 * 119.99865 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00211 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00244 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46781 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47058 * 120.00066 * 16 14 12 19 19 H 1.48493 * 109.47410 * 240.00024 * 16 14 12 20 20 S 1.70613 * 124.51490 * 269.70320 * 5 4 2 21 21 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 24 24 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 29 29 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 30 30 H 1.07992 * 122.44675 * 359.97438 * 6 5 4 31 31 H 1.08003 * 123.36111 * 179.97438 * 7 6 5 32 32 H 0.97003 * 119.99871 * 0.02562 * 11 9 8 33 33 H 0.96996 * 120.00129 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 0.4983 -2.6670 -1.6801 7 6 0.3313 -4.0217 -1.5191 8 6 1.3786 -4.6229 -0.8771 9 6 1.4787 -6.0509 -0.5676 10 8 0.5802 -6.8075 -0.8873 11 7 2.5651 -6.5272 0.0722 12 6 2.6584 -7.8617 0.3620 13 1 1.8614 -8.5330 0.0784 14 6 3.7792 -8.3531 1.0214 15 7 4.7488 -7.5363 1.3670 16 14 3.9063 -10.1741 1.4176 17 1 2.6917 -10.8734 0.9265 18 1 5.1067 -10.7426 0.7534 19 1 4.0216 -10.3542 2.8870 20 16 2.5901 -3.4081 -0.4917 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6055 -0.2618 -2.1370 29 1 3.1264 -0.6443 -1.2951 30 1 -0.2392 -2.0460 -2.1666 31 1 -0.5405 -4.5578 -1.8643 32 1 3.2806 -5.9241 0.3280 33 1 5.5310 -7.8792 1.8268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:18 Heat of formation + Delta-G solvation = -32.830515 kcal Electronic energy + Delta-G solvation = -15857.520694 eV Core-core repulsion = 13201.850772 eV Total energy + Delta-G solvation = -2655.669922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.54291 -37.69456 -35.64070 -34.03185 -31.42718 -30.25926 -27.30101 -26.89089 -24.84478 -23.08681 -20.72155 -20.17066 -18.67633 -17.72234 -17.07268 -15.49412 -15.08486 -14.75060 -14.46323 -14.26853 -13.89676 -13.64251 -13.18172 -12.71844 -12.44486 -12.29763 -12.09853 -11.92466 -11.63147 -11.45750 -11.19396 -10.93910 -10.85911 -10.74904 -10.48942 -10.38050 -10.27242 -9.68023 -8.61356 -8.18603 -8.11835 -8.04540 -6.59274 -3.92161 1.09835 2.00528 2.43948 2.91561 3.15864 3.20452 3.28112 4.06548 4.22932 4.72797 4.81152 4.87122 4.91336 5.22806 5.26930 5.44362 5.56359 5.58219 5.71263 5.76243 5.79555 5.83327 6.01155 6.10988 6.14332 6.24455 6.27912 6.48998 6.75499 6.88332 7.39832 7.91221 8.44545 9.01093 9.35511 9.90282 10.57413 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038038 B = 0.004854 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.931424 B = 5766.614791 C = 6267.342310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.039 4.039 5 C -0.226 4.226 6 C -0.138 4.138 7 C -0.103 4.103 8 C -0.205 4.205 9 C 0.493 3.507 10 O -0.589 6.589 11 N -0.542 5.542 12 C -0.293 4.293 13 H 0.111 0.889 14 C 0.023 3.977 15 N -0.887 5.887 16 Si 0.936 3.064 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.279 1.279 20 S 0.178 5.822 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.392 0.608 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.314 15.241 -2.316 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.078 4.078 5 C -0.345 4.345 6 C -0.169 4.169 7 C -0.135 4.135 8 C -0.326 4.326 9 C 0.280 3.720 10 O -0.476 6.476 11 N -0.176 5.176 12 C -0.423 4.423 13 H 0.128 0.872 14 C -0.180 4.180 15 N -0.526 5.526 16 Si 0.762 3.238 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.204 1.204 20 S 0.444 5.556 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.227 0.773 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.289 14.637 -1.702 14.792 hybrid contribution -0.853 -0.407 -0.358 1.010 sum -2.141 14.231 -2.060 14.538 Atomic orbital electron populations 1.21893 0.95018 1.02559 1.01181 1.21139 0.96407 0.95670 0.98072 1.21842 1.00941 0.95891 1.01694 1.20158 1.00732 0.88367 0.98572 1.23943 1.00856 1.00569 1.09152 1.19801 0.97970 0.94851 1.04301 1.20553 0.99280 0.93447 1.00189 1.25082 0.99836 0.98330 1.09391 1.16594 0.85005 0.84883 0.85488 1.90653 1.40435 1.57267 1.59284 1.41890 1.17243 1.09762 1.48714 1.19912 1.04870 0.83751 1.33815 0.87169 1.25417 0.95031 1.00968 0.96617 1.69623 1.08292 1.35911 1.38798 0.85696 0.78683 0.81218 0.78201 1.18902 1.20440 1.20438 1.83146 1.20629 0.96107 1.55671 0.92936 0.91768 0.93041 0.90914 0.92655 0.92677 0.92735 0.90489 0.91078 0.84996 0.83792 0.77343 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.87 37.16 0.33 -1.18 16 2 C -0.09 -0.96 2.91 -90.62 -0.26 -1.23 16 3 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.04 -0.44 5.12 -27.89 -0.14 -0.58 16 5 C -0.23 -3.25 5.05 -35.85 -0.18 -3.43 16 6 C -0.14 -2.06 8.50 -41.41 -0.35 -2.41 16 7 C -0.10 -1.89 10.02 -40.40 -0.40 -2.29 16 8 C -0.21 -4.31 6.45 -36.80 -0.24 -4.55 16 9 C 0.49 12.74 7.73 -12.95 -0.10 12.64 16 10 O -0.59 -17.02 16.41 5.15 0.08 -16.94 16 11 N -0.54 -14.42 5.27 -12.23 -0.06 -14.48 16 12 C -0.29 -8.24 9.68 -15.01 -0.15 -8.38 16 13 H 0.11 3.21 7.15 -52.49 -0.38 2.83 16 14 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 15 N -0.89 -23.78 13.05 55.50 0.72 -23.05 16 16 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 17 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 S 0.18 3.04 22.10 -107.50 -2.38 0.66 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.75 6.38 -51.93 -0.33 0.42 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.14 2.62 8.06 -52.48 -0.42 2.20 16 32 H 0.39 9.97 7.00 -40.82 -0.29 9.69 16 33 H 0.28 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -30.29 296.82 -7.79 -38.08 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.36 Total: 7.48 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.25 Total: -11.76 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.66 Total: -37.53 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.08 Total: -16.94 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.38 Total: 0.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.29 -7.79 -38.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.246 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds