Wall clock time and date at job start Sun Mar 29 2020 23:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47128 * 125.59255 * 359.69173 * 9 7 2 11 11 C 1.54575 * 107.36295 * 180.78906 * 10 9 7 12 12 C 1.53747 * 102.66628 * 21.22753 * 11 10 9 13 13 C 1.52315 * 116.25698 * 94.77554 * 12 11 10 14 14 C 1.54055 * 86.60867 * 94.20529 * 13 12 11 15 15 F 1.39902 * 113.56241 * 269.69760 * 14 13 12 16 16 F 1.39901 * 113.64048 * 138.95973 * 14 13 12 17 17 C 1.52310 * 116.26594 * 197.11902 * 12 11 10 18 18 F 1.39903 * 113.68416 * 20.22971 * 17 12 11 19 19 F 1.39888 * 113.69209 * 151.27685 * 17 12 11 20 20 C 1.47713 * 125.59204 * 179.97438 * 9 7 2 21 21 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.86452 * 300.37700 * 10 9 7 23 23 H 1.08994 * 109.86852 * 61.49081 * 10 9 7 24 24 H 1.08993 * 110.99474 * 262.85148 * 11 10 9 25 25 H 1.09008 * 110.76067 * 139.49294 * 11 10 9 26 26 H 1.08999 * 113.69021 * 208.62904 * 13 12 11 27 27 H 1.08994 * 113.69276 * 339.77138 * 13 12 11 28 28 H 1.08998 * 110.39754 * 276.23589 * 20 9 7 29 29 H 1.09000 * 110.39156 * 38.52294 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.1387 -2.5314 0.0064 11 6 -0.4540 -4.0445 0.0244 12 6 0.8477 -4.6537 0.5706 13 6 0.8941 -4.9098 2.0713 14 6 0.4306 -6.3431 1.7485 15 9 -0.9604 -6.4924 1.7392 16 9 1.0766 -7.3257 2.5065 17 6 1.0386 -6.1481 0.3465 18 9 0.2493 -6.6669 -0.6856 19 9 2.3795 -6.5359 0.2542 20 6 1.9360 -3.7331 0.0005 21 1 -0.4850 0.8400 0.0004 22 1 -0.5541 -2.0537 0.8938 23 1 -0.5589 -2.0783 -0.8914 24 1 -0.6605 -4.4123 -0.9806 25 1 -1.2895 -4.2573 0.6913 26 1 1.8976 -4.8587 2.4935 27 1 0.1645 -4.3306 2.6372 28 1 2.1940 -4.0332 -1.0151 29 1 2.8208 -3.7487 0.6369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931915283.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:25 Heat of formation + Delta-G solvation = -154.752068 kcal Electronic energy + Delta-G solvation = -19912.202637 eV Core-core repulsion = 16143.175883 eV Total energy + Delta-G solvation = -3769.026754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.75066 -49.61669 -48.93356 -48.16194 -40.43929 -36.60095 -33.65755 -30.89802 -28.81522 -26.85886 -26.21953 -23.47143 -22.26100 -20.59250 -19.44396 -19.13735 -19.01630 -18.14848 -17.91262 -16.88698 -16.57979 -15.99963 -15.69792 -15.34320 -15.30723 -15.17327 -14.85916 -14.81785 -14.77369 -14.67082 -13.96174 -13.50384 -13.28813 -13.03331 -12.73112 -12.65411 -12.19861 -12.07166 -12.01998 -11.82921 -11.64886 -11.46784 -10.70467 -8.93762 -7.85473 -5.21598 1.38566 1.50023 1.50808 1.59495 2.03297 2.37082 2.50343 2.64725 2.72134 2.93559 3.36106 3.53777 3.72984 3.89182 3.93499 3.97113 4.47837 4.57290 4.63600 4.66189 4.83719 4.89638 4.96515 5.45526 5.59580 5.74091 6.16966 7.08847 7.73458 8.36849 9.25135 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.040469 B = 0.006561 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.713158 B = 4266.439549 C = 4388.786827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.060 4.060 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.086 0.914 9 N -0.622 5.622 10 C 0.190 3.810 11 C -0.108 4.108 12 C -0.119 4.119 13 C -0.126 4.126 14 C 0.250 3.750 15 F -0.157 7.157 16 F -0.173 7.173 17 C 0.254 3.746 18 F -0.174 7.174 19 F -0.156 7.156 20 C 0.156 3.844 21 H 0.248 0.752 22 H 0.026 0.974 23 H 0.013 0.987 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.143 0.857 27 H 0.128 0.872 28 H 0.028 0.972 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -12.204 3.910 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.371 4.371 8 H 0.104 0.896 9 N -0.348 5.348 10 C 0.065 3.935 11 C -0.146 4.146 12 C -0.121 4.121 13 C -0.164 4.164 14 C 0.212 3.788 15 F -0.138 7.138 16 F -0.154 7.154 17 C 0.216 3.784 18 F -0.155 7.155 19 F -0.136 7.136 20 C 0.031 3.969 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.161 0.839 27 H 0.146 0.854 28 H 0.046 0.954 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.853 -12.050 3.899 12.694 hybrid contribution 0.170 0.651 -0.395 0.780 sum 1.023 -11.400 3.504 11.970 Atomic orbital electron populations 1.70141 1.06242 1.25436 1.58043 1.25597 0.96555 1.00861 1.02354 0.85095 0.77783 0.79209 0.77320 1.21641 1.22156 1.19183 1.19440 0.91132 0.83272 1.43279 0.89617 1.44755 1.02258 1.00563 1.87258 1.20969 0.83727 0.90049 0.98782 1.22509 0.94256 0.95899 1.01944 1.22942 1.01522 0.90327 0.97338 1.23867 1.07217 0.89446 0.95850 1.23302 0.76039 0.89738 0.89705 1.93076 1.27890 1.96364 1.96442 1.93067 1.80170 1.65062 1.77061 1.22991 0.75610 0.94561 0.85287 1.93043 1.72937 1.88284 1.61232 1.93063 1.32122 1.92126 1.96291 1.21229 0.93761 0.83986 0.97941 0.94270 0.95562 0.96835 0.90162 0.88539 0.83859 0.85413 0.95422 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.91 10.30 21.65 0.22 -54.69 15 2 C -0.06 -3.29 5.49 84.86 0.47 -2.83 15 3 Si 0.98 44.13 29.55 68.60 2.03 46.16 15 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 5 H -0.30 -13.45 7.11 99.48 0.71 -12.75 15 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 7 C -0.24 -12.92 10.28 84.04 0.86 -12.06 15 8 H 0.09 4.34 7.83 -2.91 -0.02 4.32 15 9 N -0.62 -30.06 3.41 -693.24 -2.36 -32.42 15 10 C 0.19 8.79 5.38 86.80 0.47 9.25 15 11 C -0.11 -3.72 5.70 31.38 0.18 -3.54 15 12 C -0.12 -3.75 0.90 -52.24 -0.05 -3.80 15 13 C -0.13 -3.23 7.17 30.72 0.22 -3.01 15 14 C 0.25 6.51 3.18 31.28 0.10 6.61 15 15 F -0.16 -4.21 16.29 44.97 0.73 -3.48 15 16 F -0.17 -4.47 17.20 44.97 0.77 -3.69 15 17 C 0.25 7.33 2.97 30.72 0.09 7.43 15 18 F -0.17 -5.30 16.25 44.97 0.73 -4.57 15 19 F -0.16 -4.49 16.72 44.97 0.75 -3.73 15 20 C 0.16 5.94 6.22 86.32 0.54 6.47 15 21 H 0.25 14.01 8.31 -92.71 -0.77 13.24 15 22 H 0.03 1.34 7.40 -2.39 -0.02 1.32 15 23 H 0.01 0.71 7.48 -2.39 -0.02 0.69 15 24 H 0.08 2.70 7.65 -2.39 -0.02 2.68 15 25 H 0.10 2.92 7.43 -2.38 -0.02 2.90 15 26 H 0.14 3.18 8.06 -2.39 -0.02 3.16 15 27 H 0.13 3.11 8.12 -2.39 -0.02 3.09 15 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 15 29 H 0.06 2.29 8.01 -2.39 -0.02 2.27 15 Total: -1.00 -59.81 256.76 6.93 -52.88 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: 1.18 Total: -0.96 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 2.88 Total: 4.52 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -2.14 Total: -87.11 kcal Atomic # 9 Polarization: -18.47 SS G_CDS: 2.99 Total: -15.48 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.81 6.93 -52.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931915283.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.873 kcal (2) G-P(sol) polarization free energy of solvation -59.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds