Wall clock time and date at job start Mon Mar 30 2020 00:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.47044 * 2 1 4 4 O 1.45702 * 110.52278 * 237.22175 * 2 1 3 5 5 C 1.33775 * 109.47996 * 241.36931 * 4 2 1 6 6 O 1.21509 * 123.07534 * 180.02562 * 5 4 2 7 7 N 1.34006 * 113.85467 * 0.02562 * 5 4 2 8 8 C 1.47096 * 108.88115 * 359.97438 * 7 5 4 9 9 H 1.08992 * 110.69674 * 241.36843 * 8 7 5 10 10 C 1.50708 * 110.56247 * 118.57597 * 8 7 5 11 11 O 1.21293 * 119.99946 * 345.64595 * 10 8 7 12 12 N 1.34771 * 119.99710 * 165.64690 * 10 8 7 13 13 C 1.37104 * 119.99816 * 180.02562 * 12 10 8 14 14 H 1.08000 * 119.99710 * 343.09155 * 13 12 10 15 15 C 1.38948 * 120.00045 * 163.09385 * 13 12 10 16 16 N 1.31415 * 119.99566 * 337.47298 * 15 13 12 17 17 Si 1.86801 * 120.00015 * 157.47913 * 15 13 12 18 18 H 1.48496 * 109.46990 * 265.83628 * 17 15 13 19 19 H 1.48498 * 109.47258 * 25.83605 * 17 15 13 20 20 H 1.48499 * 109.47076 * 145.83723 * 17 15 13 21 21 C 1.46498 * 120.00613 * 359.97438 * 12 10 8 22 22 C 1.47204 * 109.47011 * 275.76450 * 21 12 10 23 23 N 4.96765 * 103.59324 * 77.14165 * 2 1 3 24 24 H 1.09003 * 109.47076 * 297.37131 * 1 2 3 25 25 H 1.09009 * 109.47054 * 57.36623 * 1 2 3 26 26 H 1.09000 * 109.47598 * 177.36348 * 1 2 3 27 27 H 0.96994 * 125.55906 * 180.02562 * 7 5 4 28 28 H 0.97006 * 119.99427 * 180.02562 * 16 15 13 29 29 H 1.09007 * 109.46736 * 35.75749 * 21 12 10 30 30 H 1.08997 * 109.47650 * 155.76048 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0407 -0.7387 -1.1473 5 6 2.7631 -1.7809 -0.7211 6 8 3.3057 -2.5643 -1.4750 7 7 2.8336 -1.8821 0.6133 8 6 2.0698 -0.7785 1.2153 9 1 2.7195 -0.1444 1.8184 10 6 0.9335 -1.3137 2.0482 11 8 0.5971 -2.4741 1.9408 12 7 0.2913 -0.5030 2.9122 13 6 -0.7421 -0.9900 3.6703 14 1 -1.2221 -1.9180 3.3964 15 6 -1.1719 -0.2898 4.7908 16 7 -0.3634 0.5585 5.3855 17 14 -2.8989 -0.5543 5.4519 18 1 -3.8102 0.4686 4.8792 19 1 -3.3729 -1.9089 5.0703 20 1 -2.8863 -0.4330 6.9319 21 6 0.6979 0.8984 3.0423 22 6 1.8259 0.9966 3.9830 23 7 2.6975 1.0745 4.7074 24 1 -0.3633 0.4725 0.9126 25 1 -0.3634 0.5542 -0.8655 26 1 -0.3634 -1.0265 -0.0473 27 1 3.3111 -2.5703 1.1023 28 1 -0.6633 1.0471 6.1680 29 1 1.0032 1.2800 2.0679 30 1 -0.1398 1.4866 3.4168 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143315693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:26 Heat of formation + Delta-G solvation = -56.464534 kcal Electronic energy + Delta-G solvation = -19324.303756 eV Core-core repulsion = 16121.315771 eV Total energy + Delta-G solvation = -3202.987985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69215 -39.04002 -36.96808 -36.10574 -34.75054 -34.21540 -32.52490 -31.37750 -27.79936 -27.03620 -24.90894 -22.83491 -22.04118 -19.70558 -18.29370 -18.06631 -17.12373 -16.68441 -16.27510 -15.88366 -14.90217 -14.73886 -14.59399 -14.22989 -13.86085 -13.36213 -13.18767 -13.05234 -12.53375 -12.19422 -12.06143 -11.68288 -11.56513 -11.41286 -11.31166 -10.83173 -10.62914 -10.57754 -10.53504 -10.45999 -9.68783 -9.49431 -8.65947 -8.31630 -6.74212 -4.23398 2.77242 2.89263 2.98467 3.10386 3.14180 3.18892 3.42549 3.62903 3.72211 3.92831 4.25910 4.36408 4.65540 4.77474 4.84809 4.92053 5.13304 5.33998 5.48299 5.68798 5.85581 5.86979 6.21473 6.32665 6.95784 7.26260 7.40998 7.59209 8.00595 8.29034 8.47180 8.72309 8.91131 9.39596 10.31361 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.029455 B = 0.007578 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.368949 B = 3694.109648 C = 4063.597301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 H 0.122 0.878 4 O -0.324 6.324 5 C 0.651 3.349 6 O -0.533 6.533 7 N -0.705 5.705 8 C 0.077 3.923 9 H 0.110 0.890 10 C 0.446 3.554 11 O -0.553 6.553 12 N -0.432 5.432 13 C -0.318 4.318 14 H 0.113 0.887 15 C 0.036 3.964 16 N -0.871 5.871 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.267 1.267 20 H -0.284 1.284 21 C 0.213 3.787 22 C 0.238 3.762 23 N -0.461 5.461 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.437 0.563 28 H 0.277 0.723 29 H 0.083 0.917 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 5.748 -5.692 8.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 H 0.140 0.860 4 O -0.235 6.235 5 C 0.404 3.596 6 O -0.419 6.419 7 N -0.375 5.375 8 C -0.033 4.033 9 H 0.127 0.873 10 C 0.233 3.767 11 O -0.434 6.434 12 N -0.153 5.153 13 C -0.444 4.444 14 H 0.131 0.869 15 C -0.169 4.169 16 N -0.509 5.509 17 Si 0.755 3.245 18 H -0.199 1.199 19 H -0.191 1.191 20 H -0.210 1.210 21 C 0.086 3.914 22 C -0.081 4.081 23 N -0.140 5.140 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.280 0.720 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.685 5.187 -5.223 7.392 hybrid contribution -0.893 -0.258 0.913 1.303 sum -0.207 4.929 -4.310 6.550 Atomic orbital electron populations 1.22410 0.91153 1.05237 1.04481 1.23881 0.97330 0.95824 0.80674 0.86021 1.87265 1.63814 1.39277 1.33119 1.18395 0.78055 0.80608 0.82535 1.91037 1.50105 1.42531 1.58241 1.45580 1.54395 1.31753 1.05813 1.22516 0.95226 0.89502 0.96081 0.87257 1.19776 0.84799 0.86698 0.85459 1.90618 1.66362 1.16677 1.69746 1.43702 1.29736 1.06536 1.35277 1.19779 1.07441 1.10143 1.07045 0.86945 1.25315 0.99815 0.96724 0.95043 1.69869 1.34028 1.27354 1.19601 0.85848 0.81466 0.79343 0.77823 1.19935 1.19149 1.20978 1.18926 0.92813 0.86752 0.92931 1.29231 0.92435 0.92960 0.93467 1.80949 1.14962 1.08069 1.10053 0.88321 0.90602 0.90390 0.71979 0.91275 0.89972 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.34 37.15 0.31 -1.94 16 2 C 0.08 1.02 3.56 -26.16 -0.09 0.93 16 3 H 0.12 1.07 8.02 -51.93 -0.42 0.65 16 4 O -0.32 -5.21 10.80 -37.84 -0.41 -5.61 16 5 C 0.65 11.73 9.16 53.71 0.49 12.22 16 6 O -0.53 -11.19 18.04 -19.12 -0.34 -11.53 16 7 N -0.70 -11.50 5.63 -59.35 -0.33 -11.84 16 8 C 0.08 1.19 3.21 -68.18 -0.22 0.97 16 9 H 0.11 1.50 6.70 -51.93 -0.35 1.15 16 10 C 0.45 8.76 4.86 -10.98 -0.05 8.71 16 11 O -0.55 -13.13 16.15 5.55 0.09 -13.04 16 12 N -0.43 -8.54 1.89 -117.93 -0.22 -8.77 16 13 C -0.32 -7.22 9.33 -14.93 -0.14 -7.36 16 14 H 0.11 2.76 7.38 -52.49 -0.39 2.37 16 15 C 0.04 0.79 4.84 -17.47 -0.08 0.71 16 16 N -0.87 -19.68 9.52 55.50 0.53 -19.15 16 17 Si 0.93 17.86 29.61 -169.99 -5.03 12.83 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.21 3.48 3.86 -6.83 -0.03 3.45 16 22 C 0.24 4.54 12.68 -20.76 -0.26 4.28 16 23 N -0.46 -9.75 18.54 42.15 0.78 -8.97 16 24 H 0.10 1.24 5.06 -51.93 -0.26 0.98 16 25 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.08 1.24 7.52 -51.93 -0.39 0.85 16 27 H 0.44 6.69 8.96 -40.82 -0.37 6.32 16 28 H 0.28 6.10 8.31 -40.82 -0.34 5.76 16 29 H 0.08 0.94 5.20 -51.93 -0.27 0.67 16 30 H 0.13 2.25 6.44 -51.93 -0.33 1.91 16 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -30.52 263.07 -3.39 -33.91 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -2.33 Total: 6.24 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: -0.08 Total: 21.97 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.75 Total: -48.72 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.66 Total: -30.18 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.52 -3.39 -33.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.552 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds