Wall clock time and date at job start Sun Mar 29 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86800 * 119.99676 * 2 1 4 4 H 1.48503 * 109.46859 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47110 * 299.99849 * 3 2 1 6 6 H 1.48500 * 109.46996 * 59.99854 * 3 2 1 7 7 C 1.38847 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.38518 * 120.00529 * 179.97438 * 9 7 2 11 11 N 1.32930 * 120.43401 * 0.02562 * 10 9 7 12 12 C 1.31837 * 120.47443 * 180.02562 * 11 10 9 13 13 Cl 1.73602 * 119.13304 * 180.09161 * 12 11 10 14 14 N 1.31760 * 121.73840 * 0.12106 * 12 11 10 15 15 C 1.33099 * 121.27537 * 359.95914 * 14 12 11 16 16 C 1.37370 * 118.94881 * 359.83763 * 15 14 12 17 17 C 1.50335 * 122.87011 * 180.60076 * 16 15 14 18 18 C 1.52833 * 110.45812 * 342.43543 * 17 16 15 19 19 C 1.52862 * 108.37720 * 50.74619 * 18 17 16 20 20 C 1.50461 * 118.45813 * 179.77633 * 15 14 12 21 21 H 0.96997 * 120.00240 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99652 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.30353 * 102.73339 * 17 16 15 24 24 H 1.08994 * 109.30923 * 222.13398 * 17 16 15 25 25 H 1.09007 * 109.63497 * 170.46946 * 18 17 16 26 26 H 1.08997 * 109.63696 * 290.87671 * 18 17 16 27 27 H 1.09000 * 109.38904 * 170.54974 * 19 18 17 28 28 H 1.09003 * 109.65047 * 50.10242 * 19 18 17 29 29 H 1.09002 * 109.30307 * 282.63228 * 20 15 14 30 30 H 1.09001 * 109.29942 * 42.22040 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7094 1.3464 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0096 -1.2025 0.0005 8 1 3.0897 -1.2025 0.0010 9 7 1.3251 -2.3884 0.0005 10 6 2.0176 -3.5880 0.0005 11 7 3.3469 -3.5981 0.0011 12 6 4.0068 -4.7394 0.0005 13 17 5.7426 -4.7119 0.0037 14 7 3.3837 -5.9003 -0.0028 15 6 2.0546 -5.9712 -0.0051 16 6 1.3266 -4.8063 -0.0005 17 6 -0.1765 -4.7835 0.0107 18 6 -0.7345 -6.1407 -0.4164 19 6 -0.0530 -7.2259 0.4172 20 6 1.4091 -7.3303 -0.0141 21 1 -0.4850 0.8400 -0.0004 22 1 0.3550 -2.3884 -0.0002 23 1 -0.5259 -4.5507 1.0166 24 1 -0.5304 -4.0158 -0.6772 25 1 -1.8104 -6.1654 -0.2430 26 1 -0.5301 -6.3043 -1.4744 27 1 -0.5536 -8.1794 0.2486 28 1 -0.1053 -6.9634 1.4738 29 1 1.4592 -7.7463 -1.0204 30 1 1.9418 -7.9867 0.6740 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531331.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:58 Heat of formation + Delta-G solvation = 20.674510 kcal Electronic energy + Delta-G solvation = -16310.359893 eV Core-core repulsion = 13551.426073 eV Total energy + Delta-G solvation = -2758.933820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25087 -36.71026 -36.26670 -35.53766 -32.88213 -31.14057 -30.32841 -28.91264 -25.23576 -23.81470 -22.92774 -21.34543 -19.59596 -18.52036 -17.01804 -16.31402 -15.20829 -14.82840 -14.35080 -14.12782 -13.95182 -13.61058 -13.48604 -12.84720 -12.46860 -12.03457 -11.85590 -11.76194 -11.15024 -11.06069 -10.78900 -10.68604 -10.63226 -10.47635 -10.38914 -10.34666 -9.62103 -9.29834 -8.58277 -8.11146 -7.47963 -6.80395 -4.00589 1.89353 2.25607 2.28851 3.08907 3.10745 3.18069 3.90948 4.49958 4.63020 4.86637 5.03753 5.13047 5.14010 5.27362 5.57124 5.79016 5.85952 5.94536 6.01004 6.08561 6.18103 6.25426 6.31303 6.33407 6.55775 6.80617 7.11257 7.25054 7.60341 8.01802 8.52934 8.94493 8.99842 9.45064 10.34441 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.008232 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.470427 B = 3400.388472 C = 4899.322666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.023 3.977 3 Si 0.939 3.061 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.288 4.288 8 H 0.119 0.881 9 N -0.499 5.499 10 C 0.378 3.622 11 N -0.574 5.574 12 C 0.411 3.589 13 Cl -0.021 7.021 14 N -0.607 5.607 15 C 0.205 3.795 16 C -0.275 4.275 17 C -0.056 4.056 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.061 4.061 21 H 0.279 0.721 22 H 0.411 0.589 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -8.643 -0.002 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.419 4.419 8 H 0.137 0.863 9 N -0.106 5.106 10 C 0.128 3.872 11 N -0.306 5.306 12 C 0.112 3.888 13 Cl 0.007 6.993 14 N -0.337 5.337 15 C 0.070 3.930 16 C -0.289 4.289 17 C -0.095 4.095 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.099 4.099 21 H 0.089 0.911 22 H 0.249 0.751 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.021 -8.130 -0.001 8.130 hybrid contribution -0.661 1.026 -0.012 1.221 sum -0.682 -7.104 -0.013 7.136 Atomic orbital electron populations 1.69657 1.06222 1.29253 1.46773 1.25505 0.95816 1.00533 0.96384 0.85630 0.79919 0.79899 0.78081 1.18594 1.20316 1.20307 1.20183 0.94243 0.81692 1.45828 0.86333 1.41058 1.08437 1.02000 1.59073 1.17950 0.86929 0.86092 0.96195 1.67124 1.07556 1.29132 1.26792 1.21984 0.87428 0.85420 0.93936 1.98338 1.05913 1.98517 1.96577 1.67592 1.09711 1.27778 1.28655 1.20340 0.87760 0.93977 0.90942 1.19879 0.96574 0.92876 1.19612 1.19991 0.90899 0.97438 1.01149 1.21439 0.99177 0.94732 0.99926 1.21466 0.94724 0.98818 1.00345 1.20226 0.94654 0.92539 1.02454 0.91055 0.75055 0.91746 0.91718 0.91776 0.91825 0.91546 0.91614 0.90266 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.38 13.05 55.49 0.72 -21.66 16 2 C 0.02 0.57 5.50 -17.45 -0.10 0.48 16 3 Si 0.94 19.64 29.55 -169.99 -5.02 14.61 16 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.29 -7.44 9.72 -15.05 -0.15 -7.59 16 8 H 0.12 3.17 7.11 -52.49 -0.37 2.80 16 9 N -0.50 -12.18 5.31 -10.92 -0.06 -12.24 16 10 C 0.38 8.92 7.44 -154.69 -1.15 7.77 16 11 N -0.57 -13.96 9.21 -10.82 -0.10 -14.06 16 12 C 0.41 9.17 8.18 -92.15 -0.75 8.41 16 13 Cl -0.02 -0.40 29.27 -51.86 -1.52 -1.91 16 14 N -0.61 -12.87 10.28 -8.15 -0.08 -12.95 16 15 C 0.21 3.96 6.62 -82.47 -0.55 3.42 16 16 C -0.28 -5.58 5.75 -104.43 -0.60 -6.18 16 17 C -0.06 -0.94 4.95 -28.15 -0.14 -1.08 16 18 C -0.12 -1.51 5.97 -26.89 -0.16 -1.67 16 19 C -0.12 -1.42 5.93 -26.90 -0.16 -1.58 16 20 C -0.06 -0.88 5.97 -28.10 -0.17 -1.05 16 21 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 22 H 0.41 9.71 6.09 -40.82 -0.25 9.46 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.12 7.13 -51.93 -0.37 0.75 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 269.57 15.07 4.06 4.06 Total: -1.00 -27.36 269.57 -9.00 -36.36 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.08 Total: 6.87 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -3.92 Total: 0.93 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.48 Total: -60.92 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.91 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.36 -9.00 -36.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531331.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.036 kcal (2) G-P(sol) polarization free energy of solvation -27.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds