Wall clock time and date at job start Sun Mar 29 2020 23:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35749 * 117.00168 * 2 1 4 4 C 1.39408 * 120.81037 * 0.21887 * 3 2 1 5 5 C 1.37998 * 119.24921 * 180.28182 * 4 3 2 6 6 C 1.50701 * 119.53714 * 179.75053 * 5 4 3 7 7 N 1.31914 * 120.92540 * 359.76478 * 5 4 3 8 8 C 1.32528 * 121.77201 * 359.97438 * 7 5 4 9 9 N 1.39043 * 119.67212 * 180.02562 * 8 7 5 10 10 C 1.32764 * 120.00265 * 359.97355 * 9 8 7 11 11 H 1.08004 * 119.99989 * 0.02562 * 10 9 8 12 12 C 1.46809 * 120.00293 * 180.02562 * 10 9 8 13 13 N 1.29320 * 119.99933 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00054 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47347 * 59.99465 * 14 12 10 16 16 H 1.48501 * 109.47068 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47198 * 299.99756 * 14 12 10 18 18 C 1.38925 * 120.65437 * 359.97438 * 8 7 5 19 19 N 1.48012 * 120.48807 * 180.02562 * 18 8 7 20 20 O 1.31704 * 120.00339 * 90.00264 * 19 18 8 21 21 O 1.31700 * 120.00054 * 269.72125 * 19 18 8 22 22 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47593 * 300.00385 * 1 2 3 24 24 H 1.09008 * 109.46922 * 60.00548 * 1 2 3 25 25 H 1.07992 * 120.37207 * 0.02562 * 4 3 2 26 26 H 1.08999 * 109.47043 * 270.01318 * 6 5 4 27 27 H 1.08991 * 109.47408 * 30.01659 * 6 5 4 28 28 H 1.09000 * 109.47080 * 150.01996 * 6 5 4 29 29 H 0.97008 * 120.00112 * 179.97438 * 9 8 7 30 30 H 0.96996 * 119.99893 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3026 2.3893 0.0046 5 6 1.9624 3.6014 -0.0015 6 6 1.1660 4.8808 -0.0023 7 7 3.2804 3.6558 -0.0069 8 6 4.0241 2.5588 -0.0062 9 7 5.4103 2.6670 -0.0115 10 6 5.9827 3.8649 -0.0177 11 1 5.3715 4.7554 -0.0182 12 6 7.4463 3.9792 -0.0238 13 7 8.1781 2.9129 -0.0227 14 14 8.2515 5.6647 -0.0319 15 1 7.8380 6.4167 1.1801 16 1 9.7282 5.5077 -0.0367 17 1 7.8285 6.4096 -1.2449 18 6 3.4324 1.3019 0.0008 19 7 4.2665 0.0792 0.0021 20 8 4.6421 -0.4606 1.1433 21 8 4.6286 -0.4722 -1.1378 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2233 2.3551 0.0086 26 1 0.9700 5.1860 -1.0301 27 1 0.2206 4.7206 0.5157 28 1 1.7316 5.6611 0.5068 29 1 5.9593 1.8672 -0.0106 30 1 9.1451 2.9884 -0.0264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533866.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:02 Heat of formation + Delta-G solvation = 6.716722 kcal Electronic energy + Delta-G solvation = -18607.389699 eV Core-core repulsion = 15407.141459 eV Total energy + Delta-G solvation = -3200.248240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84743 -39.86824 -39.51038 -37.61931 -35.48186 -34.79875 -33.30415 -31.63496 -29.56555 -28.63631 -27.15315 -25.56161 -23.23168 -23.07360 -20.65865 -19.80138 -19.34895 -18.72893 -18.19093 -17.60952 -16.92863 -16.74613 -16.14246 -15.70540 -15.43558 -15.10273 -14.84327 -14.02143 -13.98328 -13.58242 -13.12717 -13.02240 -12.74748 -12.71360 -12.61060 -12.57671 -12.16969 -12.10948 -11.90374 -11.88525 -11.01218 -10.43618 -10.21380 -9.41707 -9.05595 -5.90999 -1.33204 -0.00265 0.30965 0.46242 1.33430 1.45233 1.47876 1.89347 2.11369 2.44093 2.58550 2.94805 3.71726 3.93486 3.98096 4.05765 4.32850 4.35618 4.56490 4.67852 4.72148 4.81336 4.84750 4.93750 5.10956 5.16660 5.28345 5.54803 5.63870 6.11734 6.18572 6.65218 6.96258 7.46149 8.06486 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.007694 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.633572 B = 3638.330208 C = 4724.263349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.264 3.736 4 C -0.372 4.372 5 C 0.234 3.766 6 C -0.094 4.094 7 N -0.555 5.555 8 C 0.331 3.669 9 N -0.475 5.475 10 C -0.350 4.350 11 H 0.133 0.867 12 C -0.003 4.003 13 N -0.855 5.855 14 Si 1.025 2.975 15 H -0.254 1.254 16 H -0.265 1.265 17 H -0.254 1.254 18 C -0.263 4.263 19 N 0.012 4.988 20 O -0.187 6.187 21 O -0.187 6.187 22 H 0.123 0.877 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.180 0.820 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.392 0.608 30 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.729 4.428 -0.022 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.210 3.790 4 C -0.398 4.398 5 C 0.082 3.918 6 C -0.151 4.151 7 N -0.279 5.279 8 C 0.085 3.915 9 N -0.067 5.067 10 C -0.481 4.481 11 H 0.150 0.850 12 C -0.216 4.216 13 N -0.483 5.483 14 Si 0.843 3.157 15 H -0.178 1.178 16 H -0.189 1.189 17 H -0.178 1.178 18 C -0.356 4.356 19 N 0.503 4.497 20 O -0.390 6.390 21 O -0.390 6.390 22 H 0.141 0.859 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.197 0.803 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.226 0.774 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.009 5.608 -0.027 13.254 hybrid contribution 0.835 -1.592 -0.012 1.798 sum -11.174 4.016 -0.039 11.873 Atomic orbital electron populations 1.23554 0.73999 1.06143 1.03733 1.86021 1.25975 1.26279 1.87221 1.18425 0.86837 0.86819 0.86968 1.21398 1.01643 0.89086 1.27705 1.21635 0.87996 0.96868 0.85330 1.20836 0.98875 0.90902 1.04507 1.67193 1.07675 1.26179 1.26874 1.17045 0.85153 0.85754 1.03524 1.40164 1.02102 1.09861 1.54565 1.21409 0.90326 0.86405 1.49979 0.84978 1.28456 0.95719 1.04654 0.92813 1.68720 1.09266 1.33994 1.36342 0.84537 0.76636 0.73903 0.80616 1.17785 1.18924 1.17770 1.19566 0.88325 0.80242 1.47488 1.50386 0.96908 1.01612 1.00761 1.96160 1.59940 1.66776 1.16096 1.96159 1.60445 1.66106 1.16268 0.85932 0.90204 0.90238 0.80255 0.88456 0.87291 0.90757 0.77403 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.84 113.37 1.12 1.51 16 2 O -0.34 -12.51 10.32 -90.74 -0.94 -13.44 16 3 C 0.26 10.78 6.73 22.74 0.15 10.93 16 4 C -0.37 -12.05 8.74 22.49 0.20 -11.85 16 5 C 0.23 8.13 6.78 42.49 0.29 8.42 16 6 C -0.09 -2.10 10.16 71.24 0.72 -1.37 16 7 N -0.55 -25.09 8.94 -181.44 -1.62 -26.71 16 8 C 0.33 16.96 7.41 132.96 0.98 17.95 16 9 N -0.47 -26.05 5.28 -185.38 -0.98 -27.03 16 10 C -0.35 -18.40 9.94 86.80 0.86 -17.54 16 11 H 0.13 6.77 7.10 -2.91 -0.02 6.75 16 12 C 0.00 -0.12 5.70 87.31 0.50 0.37 16 13 N -0.86 -44.02 13.08 23.26 0.30 -43.71 16 14 Si 1.03 36.76 29.65 68.60 2.03 38.80 16 15 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 16 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 17 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 18 C -0.26 -13.09 6.35 36.73 0.23 -12.86 16 19 N 0.01 0.66 3.82 -45.63 -0.17 0.48 16 20 O -0.19 -10.00 19.97 3.51 0.07 -9.93 16 21 O -0.19 -10.00 19.97 3.51 0.07 -9.93 16 22 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.08 1.36 7.70 -2.39 -0.02 1.34 16 24 H 0.08 1.36 7.72 -2.38 -0.02 1.34 16 25 H 0.18 3.94 6.46 -2.91 -0.02 3.92 16 26 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.11 1.63 8.07 -2.39 -0.02 1.61 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.39 22.77 7.20 -92.70 -0.67 22.10 16 30 H 0.31 14.12 8.26 -92.71 -0.77 13.36 16 Total: -1.00 -68.75 280.92 4.35 -64.39 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.53 Total: 31.53 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.05 Total: -4.44 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -2.47 Total: -96.97 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.80 Total: -33.31 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.80 kcal Total: -68.75 4.35 -64.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533866.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.109 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds