Wall clock time and date at job start Sun Mar 29 2020 22:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32291 * 120.49468 * 2 1 4 4 C 1.31800 * 120.94864 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.00846 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49597 * 188.74685 * 5 4 3 7 7 C 1.52997 * 117.50136 * 120.08387 * 5 4 3 8 8 N 1.31854 * 121.98061 * 0.02562 * 4 3 2 9 9 C 1.32308 * 120.88746 * 359.66497 * 8 4 3 10 10 Cl 1.73594 * 120.52007 * 180.33400 * 9 8 4 11 11 C 1.39316 * 120.49610 * 180.02562 * 2 1 3 12 12 N 1.39372 * 120.89498 * 359.97438 * 11 2 1 13 13 C 1.36829 * 119.99735 * 93.20196 * 12 11 2 14 14 H 1.07994 * 120.00174 * 5.83682 * 13 12 11 15 15 C 1.38796 * 119.99731 * 185.84013 * 13 12 11 16 16 N 1.31590 * 120.00419 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99993 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47053 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47232 * 119.99966 * 17 15 13 20 20 H 1.48496 * 109.47468 * 240.00109 * 17 15 13 21 21 H 1.09001 * 109.47198 * 269.97210 * 1 2 3 22 22 H 1.09001 * 109.47616 * 29.97334 * 1 2 3 23 23 H 1.09003 * 109.47098 * 149.97019 * 1 2 3 24 24 H 1.09001 * 115.54730 * 334.41503 * 5 4 3 25 25 H 1.08999 * 117.50376 * 359.97438 * 6 5 4 26 26 H 1.09005 * 117.49955 * 145.02220 * 6 5 4 27 27 H 1.08991 * 117.49931 * 214.97946 * 7 5 4 28 28 H 1.09009 * 117.49656 * 359.97438 * 7 5 4 29 29 H 0.96998 * 120.00627 * 273.47777 * 12 11 2 30 30 H 0.97002 * 120.00070 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1783 1.1399 0.0000 4 6 3.4962 1.1504 -0.0005 5 6 4.2166 2.4741 0.0001 6 6 5.7323 2.4535 -0.2069 7 6 5.1522 2.7687 1.1742 8 7 4.2034 0.0375 -0.0015 9 6 3.6094 -1.1447 0.0045 10 17 4.5498 -2.6038 0.0118 11 6 2.2139 -1.2004 -0.0005 12 7 1.5466 -2.4240 -0.0005 13 6 1.2767 -3.0560 -1.1837 14 1 1.6620 -2.6558 -2.1099 15 6 0.5076 -4.2114 -1.1936 16 7 0.0376 -4.6987 -0.0653 17 14 0.1385 -5.0738 -2.8090 18 1 0.7773 -4.3302 -3.9245 19 1 0.6758 -6.4575 -2.7655 20 1 -1.3305 -5.1198 -3.0213 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8897 -0.5143 24 1 3.6620 3.3112 -0.4238 25 1 6.2086 1.4826 -0.3431 26 1 6.1751 3.2774 -0.7666 27 1 5.2135 3.7996 1.5225 28 1 5.2465 2.0052 1.9465 29 1 1.2699 -2.8256 0.8379 30 1 -0.5002 -5.5059 -0.0723 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534584.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:18 Heat of formation + Delta-G solvation = 74.170121 kcal Electronic energy + Delta-G solvation = -16137.636523 eV Core-core repulsion = 13381.022447 eV Total energy + Delta-G solvation = -2756.614076 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65090 -37.18388 -36.07617 -35.11117 -33.50836 -31.86403 -29.60271 -27.57233 -24.98957 -23.16292 -22.60286 -22.23448 -20.30737 -17.66474 -17.55230 -16.44625 -15.98304 -14.99579 -14.63185 -14.19862 -14.04404 -13.36015 -12.89827 -12.68844 -12.05233 -11.87542 -11.66115 -11.46240 -11.38716 -11.06834 -10.95992 -10.50423 -10.42996 -10.38427 -10.27625 -9.96453 -9.69710 -9.62805 -8.77832 -8.28678 -7.38408 -6.04512 -3.41812 1.35881 1.46052 2.33166 3.30455 3.37905 3.39458 3.71170 4.08693 4.28020 4.40729 4.62188 4.93445 5.02000 5.12709 5.16653 5.27089 5.59197 5.66393 5.74673 5.89956 6.04594 6.08288 6.14248 6.28885 6.42017 6.54448 6.88269 7.34057 7.54927 8.13804 8.51355 9.22206 9.75029 9.98836 11.15362 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.029689 B = 0.006711 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.891110 B = 4171.092359 C = 4670.262080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.162 3.838 3 N -0.515 5.515 4 C 0.332 3.668 5 C -0.089 4.089 6 C -0.157 4.157 7 C -0.160 4.160 8 N -0.523 5.523 9 C 0.194 3.806 10 Cl -0.017 7.017 11 C 0.126 3.874 12 N -0.659 5.659 13 C -0.255 4.255 14 H 0.074 0.926 15 C 0.008 3.992 16 N -0.919 5.919 17 Si 0.912 3.088 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.287 1.287 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.400 0.600 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 10.988 1.402 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.013 3.987 3 N -0.230 5.230 4 C 0.065 3.935 5 C -0.109 4.109 6 C -0.195 4.195 7 C -0.198 4.198 8 N -0.241 5.241 9 C 0.019 3.981 10 Cl 0.011 6.989 11 C 0.022 3.978 12 N -0.298 5.298 13 C -0.384 4.384 14 H 0.092 0.908 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.214 1.214 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.120 0.880 24 H 0.144 0.856 25 H 0.128 0.872 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.239 0.761 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.590 11.541 1.230 13.347 hybrid contribution -0.546 -1.677 -0.569 1.853 sum 6.044 9.864 0.661 11.587 Atomic orbital electron populations 1.20645 0.87263 1.04298 1.03053 1.22690 0.98082 0.87042 0.90849 1.67781 1.08987 1.30873 1.15394 1.21645 0.86088 0.91559 0.94213 1.20491 0.91961 0.92883 1.05594 1.23011 0.93671 1.03958 0.98825 1.22965 1.02467 1.02417 0.91940 1.67211 1.42799 0.97557 1.16528 1.24036 0.89821 0.88172 0.96094 1.98394 1.73162 1.31443 1.95891 1.18875 0.89847 0.90971 0.98157 1.39692 1.65650 1.16528 1.07948 1.19109 1.27509 1.06451 0.85292 0.90798 1.24781 0.98984 0.97957 0.97344 1.69647 1.38457 1.23495 1.24767 0.86065 0.77855 0.79458 0.82488 1.20215 1.21397 1.21359 0.90602 0.91185 0.88038 0.85622 0.87249 0.88516 0.88282 0.88686 0.76084 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.00 36.00 0.36 -1.28 16 2 C 0.16 3.18 6.85 -82.00 -0.56 2.62 16 3 N -0.51 -9.67 10.26 -6.81 -0.07 -9.74 16 4 C 0.33 5.96 7.31 -157.14 -1.15 4.81 16 5 C -0.09 -1.23 6.23 -91.77 -0.57 -1.80 16 6 C -0.16 -1.84 10.01 -26.69 -0.27 -2.11 16 7 C -0.16 -1.83 10.24 -26.69 -0.27 -2.11 16 8 N -0.52 -10.02 9.33 -7.66 -0.07 -10.10 16 9 C 0.19 4.02 7.36 -16.82 -0.12 3.90 16 10 Cl -0.02 -0.35 28.73 -51.86 -1.49 -1.84 16 11 C 0.13 2.71 5.91 -83.50 -0.49 2.21 16 12 N -0.66 -15.55 3.93 -9.39 -0.04 -15.59 16 13 C -0.25 -6.54 9.60 -15.12 -0.15 -6.69 16 14 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 15 C 0.01 0.20 5.50 -17.45 -0.10 0.10 16 16 N -0.92 -25.36 13.06 55.49 0.72 -24.64 16 17 Si 0.91 21.09 29.55 -169.99 -5.02 16.06 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.10 1.97 7.28 -51.93 -0.38 1.59 16 24 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.11 1.47 7.53 -51.93 -0.39 1.08 16 26 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.40 9.93 8.03 -40.82 -0.33 9.60 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 283.01 15.07 4.26 4.26 Total: -1.00 -27.48 283.01 -8.20 -35.68 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.18 Total: 6.23 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.32 Total: -0.34 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.55 Total: -60.06 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.49 Total: -1.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.48 -8.20 -35.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534584.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.846 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds