Wall clock time and date at job start Sun Mar 29 2020 22:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32291 * 120.49468 * 2 1 4 4 C 1.31800 * 120.94864 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.00846 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49597 * 188.74685 * 5 4 3 7 7 C 1.52997 * 117.50136 * 120.08387 * 5 4 3 8 8 N 1.31854 * 121.98061 * 0.02562 * 4 3 2 9 9 C 1.32308 * 120.88746 * 359.66497 * 8 4 3 10 10 Cl 1.73594 * 120.52007 * 180.33400 * 9 8 4 11 11 C 1.39316 * 120.49610 * 180.02562 * 2 1 3 12 12 N 1.39372 * 120.89498 * 359.97438 * 11 2 1 13 13 C 1.36829 * 119.99735 * 93.20196 * 12 11 2 14 14 H 1.07994 * 120.00174 * 5.83682 * 13 12 11 15 15 C 1.38796 * 119.99731 * 185.84013 * 13 12 11 16 16 N 1.31590 * 120.00419 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99993 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47053 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47232 * 119.99966 * 17 15 13 20 20 H 1.48496 * 109.47468 * 240.00109 * 17 15 13 21 21 H 1.09001 * 109.47198 * 269.97210 * 1 2 3 22 22 H 1.09001 * 109.47616 * 29.97334 * 1 2 3 23 23 H 1.09003 * 109.47098 * 149.97019 * 1 2 3 24 24 H 1.09001 * 115.54730 * 334.41503 * 5 4 3 25 25 H 1.08999 * 117.50376 * 359.97438 * 6 5 4 26 26 H 1.09005 * 117.49955 * 145.02220 * 6 5 4 27 27 H 1.08991 * 117.49931 * 214.97946 * 7 5 4 28 28 H 1.09009 * 117.49656 * 359.97438 * 7 5 4 29 29 H 0.96998 * 120.00627 * 273.47777 * 12 11 2 30 30 H 0.97002 * 120.00070 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1783 1.1399 0.0000 4 6 3.4962 1.1504 -0.0005 5 6 4.2166 2.4741 0.0001 6 6 5.7323 2.4535 -0.2069 7 6 5.1522 2.7687 1.1742 8 7 4.2034 0.0375 -0.0015 9 6 3.6094 -1.1447 0.0045 10 17 4.5498 -2.6038 0.0118 11 6 2.2139 -1.2004 -0.0005 12 7 1.5466 -2.4240 -0.0005 13 6 1.2767 -3.0560 -1.1837 14 1 1.6620 -2.6558 -2.1099 15 6 0.5076 -4.2114 -1.1936 16 7 0.0376 -4.6987 -0.0653 17 14 0.1385 -5.0738 -2.8090 18 1 0.7773 -4.3302 -3.9245 19 1 0.6758 -6.4575 -2.7655 20 1 -1.3305 -5.1198 -3.0213 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8897 -0.5143 24 1 3.6620 3.3112 -0.4238 25 1 6.2086 1.4826 -0.3431 26 1 6.1751 3.2774 -0.7666 27 1 5.2135 3.7996 1.5225 28 1 5.2465 2.0052 1.9465 29 1 1.2699 -2.8256 0.8379 30 1 -0.5002 -5.5059 -0.0723 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534584.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:18 Heat of formation + Delta-G solvation = 59.051049 kcal Electronic energy + Delta-G solvation = -16138.292136 eV Core-core repulsion = 13381.022447 eV Total energy + Delta-G solvation = -2757.269688 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.15502 -38.40183 -37.64501 -36.74934 -35.04180 -33.69408 -31.22100 -29.11663 -26.68956 -24.70997 -24.15300 -23.18589 -21.59868 -19.53902 -19.11447 -17.96162 -17.55598 -16.44667 -15.97669 -15.90016 -15.41916 -15.18031 -14.32315 -14.11939 -13.46457 -13.23053 -13.18519 -13.06582 -12.92429 -12.60883 -12.32516 -12.27187 -12.10991 -11.76422 -11.54077 -11.48257 -11.33956 -11.15675 -10.47369 -9.83779 -9.25978 -8.04598 -5.42758 -0.19735 -0.09241 0.73889 1.46865 1.49126 1.57558 2.39981 2.51350 2.79228 3.04254 3.22799 3.29294 3.37068 3.91002 3.97807 4.05568 4.15259 4.35206 4.59655 4.73519 4.81886 4.90238 4.95066 5.08908 5.20561 5.35706 5.38133 5.48036 5.80990 6.18017 6.99939 7.20816 7.86628 8.03557 9.15757 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.029689 B = 0.006711 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.891110 B = 4171.092359 C = 4670.262080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.164 3.836 3 N -0.517 5.517 4 C 0.334 3.666 5 C -0.113 4.113 6 C -0.146 4.146 7 C -0.143 4.143 8 N -0.527 5.527 9 C 0.188 3.812 10 Cl -0.017 7.017 11 C 0.094 3.906 12 N -0.661 5.661 13 C -0.247 4.247 14 H 0.066 0.934 15 C -0.040 4.040 16 N -0.950 5.950 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.285 1.285 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.145 0.855 25 H 0.089 0.911 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.391 0.609 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 13.093 1.013 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 N -0.232 5.232 4 C 0.068 3.932 5 C -0.133 4.133 6 C -0.184 4.184 7 C -0.181 4.181 8 N -0.245 5.245 9 C 0.013 3.987 10 Cl 0.012 6.988 11 C -0.010 4.010 12 N -0.300 5.300 13 C -0.376 4.376 14 H 0.084 0.916 15 C -0.235 4.235 16 N -0.597 5.597 17 Si 0.796 3.204 18 H -0.197 1.197 19 H -0.218 1.218 20 H -0.212 1.212 21 H 0.110 0.890 22 H 0.110 0.890 23 H 0.096 0.904 24 H 0.163 0.837 25 H 0.108 0.892 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.228 0.772 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.294 13.687 0.831 15.532 hybrid contribution -0.649 -2.172 -0.408 2.303 sum 6.646 11.515 0.423 13.302 Atomic orbital electron populations 1.20620 0.85778 1.04146 1.03991 1.22957 0.99172 0.86755 0.89528 1.67937 1.09416 1.29972 1.15919 1.22636 0.86207 0.92847 0.91559 1.20765 0.93029 0.91139 1.08345 1.23085 0.91727 1.04169 0.99422 1.23070 1.00077 1.03840 0.91100 1.67359 1.42623 0.97350 1.17178 1.23963 0.89827 0.88892 0.96034 1.98385 1.73013 1.31561 1.95883 1.19037 0.90067 0.90799 1.01069 1.39495 1.66264 1.17340 1.06868 1.19165 1.26616 1.06101 0.85750 0.91624 1.25400 0.99445 0.98811 0.99815 1.69760 1.39650 1.23958 1.26306 0.85196 0.77526 0.78109 0.79586 1.19693 1.21802 1.21177 0.89044 0.88961 0.90365 0.83733 0.89242 0.85341 0.84939 0.90200 0.77205 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 10.00 71.23 0.71 -2.25 16 2 C 0.16 6.36 6.85 42.75 0.29 6.65 16 3 N -0.52 -18.65 10.26 -175.47 -1.80 -20.45 16 4 C 0.33 11.46 7.31 138.73 1.01 12.47 16 5 C -0.11 -2.78 6.23 -11.54 -0.07 -2.85 16 6 C -0.15 -2.98 10.01 30.62 0.31 -2.68 16 7 C -0.14 -2.80 10.24 30.62 0.31 -2.49 16 8 N -0.53 -19.80 9.33 -178.14 -1.66 -21.46 16 9 C 0.19 7.78 7.36 84.96 0.63 8.41 16 10 Cl -0.02 -0.68 28.73 -2.72 -0.08 -0.76 16 11 C 0.09 4.04 5.91 38.54 0.23 4.26 16 12 N -0.66 -31.75 3.93 -183.63 -0.72 -32.47 16 13 C -0.25 -12.83 9.60 84.05 0.81 -12.02 16 14 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 15 C -0.04 -2.11 5.50 84.86 0.47 -1.64 16 16 N -0.95 -53.27 13.06 21.65 0.28 -52.99 16 17 Si 0.97 43.59 29.55 68.60 2.03 45.61 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 22 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 23 H 0.08 3.03 7.28 -2.39 -0.02 3.02 16 24 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 25 H 0.09 2.23 7.53 -2.39 -0.02 2.21 16 26 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.39 19.93 8.03 -92.71 -0.74 19.18 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -58.58 283.01 3.17 -55.40 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.43 Total: 19.24 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 4.69 Total: 7.87 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -3.90 Total: -127.37 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -58.58 3.17 -55.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534584.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.455 kcal (2) G-P(sol) polarization free energy of solvation -58.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds