Wall clock time and date at job start Sun Mar 29 2020 23:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.46876 * 30.00467 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.47064 * 179.97438 * 13 11 10 15 15 C 1.38172 * 120.01277 * 264.72240 * 14 13 11 16 16 C 1.38432 * 120.03031 * 179.79239 * 15 14 13 17 17 F 1.35101 * 119.97184 * 180.25426 * 16 15 14 18 18 C 1.38482 * 120.05577 * 0.46314 * 16 15 14 19 19 C 1.38118 * 120.03175 * 359.78943 * 18 16 15 20 20 C 1.38676 * 120.01470 * 84.99834 * 14 13 11 21 21 O 1.35944 * 120.03666 * 359.97438 * 20 14 13 22 22 H 0.97009 * 119.99937 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 24 24 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 25 25 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 27 27 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 28 28 H 1.07999 * 119.98718 * 0.02562 * 15 14 13 29 29 H 1.08005 * 119.97977 * 179.76995 * 18 16 15 30 30 H 1.08004 * 120.01647 * 179.97438 * 19 18 16 31 31 H 0.96704 * 114.00161 * 89.99312 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5753 -0.0022 11 6 5.3248 -2.8216 -0.0024 12 8 6.1130 -1.8998 -0.0021 13 6 5.8271 -4.2424 -0.0041 14 6 7.3342 -4.2425 -0.0046 15 6 8.0249 -4.3512 -1.1963 16 6 9.4092 -4.3469 -1.1975 17 9 10.0834 -4.4482 -2.3639 18 6 10.1036 -4.2434 -0.0038 19 6 9.4156 -4.1398 1.1893 20 6 8.0282 -4.1391 1.1915 21 8 7.3499 -4.0372 2.3653 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 3.3694 -3.3126 -0.0021 26 1 5.4637 -4.7574 0.8852 27 1 5.4639 -4.7552 -0.8948 28 1 7.4846 -4.4358 -2.1276 29 1 11.1836 -4.2439 -0.0059 30 1 9.9573 -4.0594 2.1202 31 1 7.1532 -4.8878 2.7811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156059136.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:28 Heat of formation + Delta-G solvation = -106.150096 kcal Electronic energy + Delta-G solvation = -17781.393170 eV Core-core repulsion = 14556.330696 eV Total energy + Delta-G solvation = -3225.062474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.96801 -40.17963 -38.55832 -36.57294 -34.30484 -32.90732 -32.30616 -29.79510 -28.57220 -26.87728 -23.04314 -22.59462 -21.51565 -19.86647 -18.53294 -17.51438 -17.10204 -16.93587 -16.08227 -15.64012 -15.43684 -15.19328 -14.76895 -14.25906 -14.00567 -13.80681 -13.34562 -12.98349 -12.90163 -12.46700 -12.33048 -11.87010 -11.83181 -11.54267 -11.01595 -10.75602 -10.58618 -9.96495 -9.51158 -9.39683 -9.01031 -8.77467 -8.52123 -8.13905 -6.21497 -4.23622 0.93888 1.02754 3.23800 3.25965 3.28545 3.34373 3.43559 3.99014 4.06958 4.17816 4.34235 4.49640 4.62686 4.90238 5.13854 5.16932 5.33960 5.40368 5.44680 5.71008 5.79397 5.95255 5.99060 6.27215 6.61725 6.82469 7.08515 7.23170 7.39942 7.54239 8.13469 8.51686 8.75140 8.94640 9.39031 10.90423 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.033983 B = 0.004535 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.732189 B = 6172.604893 C = 6351.690626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.706 5.706 11 C 0.506 3.494 12 O -0.548 6.548 13 C -0.101 4.101 14 C -0.054 4.054 15 C -0.127 4.127 16 C 0.088 3.912 17 F -0.141 7.141 18 C -0.142 4.142 19 C -0.117 4.117 20 C 0.113 3.887 21 O -0.486 6.486 22 H 0.268 0.732 23 H 0.025 0.975 24 H 0.020 0.980 25 H 0.396 0.604 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.641 -13.252 1.375 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.355 5.355 11 C 0.290 3.710 12 O -0.426 6.426 13 C -0.141 4.141 14 C -0.055 4.055 15 C -0.146 4.146 16 C 0.069 3.931 17 F -0.119 7.119 18 C -0.161 4.161 19 C -0.136 4.136 20 C 0.068 3.932 21 O -0.295 6.295 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.230 0.770 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 17.064 -11.837 1.226 20.803 hybrid contribution 0.040 0.100 -0.124 0.164 sum 17.103 -11.737 1.102 20.773 Atomic orbital electron populations 1.69882 1.06206 1.27423 1.49498 1.24789 0.94779 0.99161 0.93843 0.86826 0.80621 0.83253 0.79065 1.19851 1.20870 1.18493 1.21094 0.88519 0.95216 1.53290 0.90236 1.19486 0.95191 0.78700 0.96769 1.46143 1.05526 1.11026 1.72809 1.20191 0.83169 0.90163 0.77475 1.90680 1.55488 1.46149 1.50327 1.20592 0.91431 0.96944 1.05158 1.19529 0.95149 0.98592 0.92242 1.20903 0.92260 1.02481 0.98938 1.17591 0.90013 1.03991 0.81481 1.91492 1.80296 1.93707 1.46447 1.20955 1.00735 1.03505 0.90904 1.21207 0.93309 1.00644 0.98432 1.18248 0.89704 0.99817 0.85436 1.84969 1.76334 1.33938 1.34300 0.92264 0.95697 0.96241 0.77037 0.87835 0.88007 0.84334 0.84505 0.84433 0.75767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.50 4.50 -5.19 -0.02 5.47 16 10 N -0.71 -14.23 5.55 -61.47 -0.34 -14.57 16 11 C 0.51 9.61 7.82 -10.98 -0.09 9.53 16 12 O -0.55 -12.86 16.03 5.56 0.09 -12.77 16 13 C -0.10 -1.31 5.55 -29.03 -0.16 -1.47 16 14 C -0.05 -0.72 4.39 -104.48 -0.46 -1.18 16 15 C -0.13 -1.62 9.65 -39.53 -0.38 -2.00 16 16 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 17 F -0.14 -1.78 17.27 2.25 0.04 -1.75 16 18 C -0.14 -1.54 10.02 -39.54 -0.40 -1.94 16 19 C -0.12 -1.29 9.98 -39.44 -0.39 -1.68 16 20 C 0.11 1.43 6.68 -39.24 -0.26 1.17 16 21 O -0.49 -5.84 12.64 -19.56 -0.25 -6.09 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 24 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 25 H 0.40 6.85 8.32 -40.82 -0.34 6.51 16 26 H 0.10 1.07 7.69 -51.93 -0.40 0.67 16 27 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 28 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 30 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.39 2.38 9.06 45.56 0.41 2.79 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -35.02 283.08 -5.33 -40.35 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.36 Total: 3.76 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.89 Total: -4.45 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.43 Total: -40.36 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.16 Total: -18.85 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.02 -5.33 -40.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156059136.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.801 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds