Wall clock time and date at job start Sun Mar 29 2020 23:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99965 * 2 1 4 4 H 1.48501 * 109.46712 * 269.99922 * 3 2 1 5 5 H 1.48492 * 109.46909 * 29.99904 * 3 2 1 6 6 H 1.48504 * 109.46856 * 150.00152 * 3 2 1 7 7 C 1.38775 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.36842 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.39375 * 119.99986 * 179.97438 * 9 7 2 11 11 C 1.39084 * 120.06507 * 0.02562 * 10 9 7 12 12 C 1.38019 * 119.93701 * 180.02562 * 11 10 9 13 13 C 1.38554 * 120.06360 * 0.02562 * 12 11 10 14 14 F 1.35095 * 119.93506 * 179.97438 * 13 12 11 15 15 C 1.38514 * 120.12824 * 359.97438 * 13 12 11 16 16 C 1.50694 * 119.96439 * 179.97438 * 15 13 12 17 17 O 1.43758 * 109.62994 * 194.36906 * 16 15 13 18 18 C 1.44791 * 104.81187 * 215.81160 * 17 16 15 19 19 C 1.54909 * 101.72513 * 36.10181 * 18 17 16 20 20 O 1.43365 * 109.63192 * 75.00780 * 16 15 13 21 21 C 1.38066 * 120.06297 * 359.72451 * 15 13 12 22 22 H 0.96991 * 119.99726 * 359.97438 * 1 2 3 23 23 H 0.97005 * 120.00073 * 359.97438 * 9 7 2 24 24 H 1.08000 * 120.03276 * 0.02562 * 11 10 9 25 25 H 1.08005 * 119.96472 * 180.02562 * 12 11 10 26 26 H 1.09001 * 109.63266 * 314.60932 * 16 15 13 27 27 H 1.09001 * 110.97239 * 277.98962 * 18 17 16 28 28 H 1.09006 * 111.00555 * 154.22492 * 18 17 16 29 29 H 1.08997 * 110.69383 * 206.04012 * 19 18 17 30 30 H 1.09001 * 110.69546 * 82.83097 * 19 18 17 31 31 H 1.07994 * 120.02831 * 180.29767 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0100 -1.2018 0.0005 8 1 3.0900 -1.2019 0.0001 9 7 1.3258 -2.3869 0.0005 10 6 2.0227 -3.5939 0.0005 11 6 3.4135 -3.5955 0.0011 12 6 4.1009 -4.7923 0.0005 13 6 3.4068 -5.9915 -0.0011 14 9 4.0823 -7.1614 -0.0021 15 6 2.0217 -5.9930 -0.0016 16 6 1.2705 -7.2993 -0.0039 17 8 -0.1072 -7.0636 -0.3401 18 6 -0.8512 -8.0140 0.4596 19 6 -0.0229 -8.0408 1.7684 20 8 1.3327 -7.8931 1.2995 21 6 1.3287 -4.7989 0.0052 22 1 -0.4849 0.8400 0.0004 23 1 0.3557 -2.3869 0.0005 24 1 3.9551 -2.6611 0.0019 25 1 5.1810 -4.7941 0.0014 26 1 1.7132 -7.9751 -0.7357 27 1 -0.8651 -8.9958 -0.0137 28 1 -1.8647 -7.6587 0.6464 29 1 -0.1502 -8.9918 2.2854 30 1 -0.2991 -7.2088 2.4162 31 1 0.2488 -4.8007 0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186562.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:35 Heat of formation + Delta-G solvation = -102.843573 kcal Electronic energy + Delta-G solvation = -18330.844717 eV Core-core repulsion = 15105.925625 eV Total energy + Delta-G solvation = -3224.919092 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.79565 -40.23284 -38.18615 -34.98168 -34.84199 -32.02268 -31.28524 -29.13209 -27.74392 -24.85179 -24.33825 -23.16820 -21.65783 -20.32918 -17.89717 -17.40333 -17.00289 -16.29577 -16.12716 -15.63023 -14.73152 -14.57335 -14.51604 -14.23727 -13.70674 -13.47500 -13.32999 -12.81944 -12.50082 -12.24574 -12.19502 -11.85515 -11.54783 -11.35919 -11.20263 -10.73979 -10.45452 -10.17756 -10.04959 -9.96811 -9.39450 -8.73168 -8.18848 -6.71634 -6.64215 -3.80541 2.07270 2.33310 3.10731 3.13173 3.16131 3.60975 3.98556 4.13187 4.50831 4.62426 4.89438 5.02975 5.11591 5.15117 5.33180 5.39176 5.44553 5.51825 5.67187 5.77097 5.94247 6.24079 6.34181 6.75263 6.78807 7.05785 7.13856 7.27861 7.32020 7.38149 7.62220 7.94843 8.67342 9.24854 9.44911 10.52159 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.005697 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.614583 B = 4913.324455 C = 5695.496979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.020 3.980 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.554 5.554 10 C 0.196 3.804 11 C -0.195 4.195 12 C -0.090 4.090 13 C -0.024 4.024 14 F -0.162 7.162 15 C -0.087 4.087 16 C 0.284 3.716 17 O -0.367 6.367 18 C 0.014 3.986 19 C 0.019 3.981 20 O -0.374 6.374 21 C -0.183 4.183 22 H 0.276 0.724 23 H 0.401 0.599 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -10.911 1.309 11.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.183 4.183 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.156 5.156 10 C 0.074 3.926 11 C -0.220 4.220 12 C -0.110 4.110 13 C -0.047 4.047 14 F -0.142 7.142 15 C -0.089 4.089 16 C 0.190 3.810 17 O -0.287 6.287 18 C -0.062 4.062 19 C -0.057 4.057 20 O -0.295 6.295 21 C -0.207 4.207 22 H 0.086 0.914 23 H 0.236 0.764 24 H 0.142 0.858 25 H 0.135 0.865 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.669 -10.323 1.263 10.421 hybrid contribution -0.094 0.621 0.027 0.628 sum -0.763 -9.702 1.290 9.817 Atomic orbital electron populations 1.69690 1.06027 1.28674 1.48267 1.25320 0.95760 0.99993 0.97260 0.85800 0.79142 0.80509 0.78597 1.20157 1.20667 1.19249 1.19755 0.93129 0.82693 1.47571 0.87882 1.41024 1.08151 1.01843 1.64548 1.17819 0.91629 0.86135 0.96973 1.20320 0.92511 0.97126 1.12034 1.20563 0.98883 0.90967 1.00586 1.16676 0.88476 0.80900 1.18696 1.91326 1.80427 1.46813 1.95585 1.19257 0.91711 0.93823 1.04124 1.22506 0.82595 0.91747 0.84184 1.89290 1.17204 1.57888 1.64358 1.24372 0.97732 0.94061 0.90065 1.24177 0.81755 1.02837 0.96951 1.88983 1.25648 1.82127 1.32741 1.19914 0.98981 0.89651 1.12184 0.91428 0.76427 0.85763 0.86529 0.89250 0.90831 0.87438 0.88526 0.90572 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 13.05 55.49 0.72 -22.74 16 2 C 0.02 0.51 5.50 -17.45 -0.10 0.41 16 3 Si 0.93 19.52 29.55 -169.99 -5.02 14.49 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 7 C -0.30 -7.62 9.56 -15.12 -0.14 -7.76 16 8 H 0.10 2.48 5.68 -52.49 -0.30 2.19 16 9 N -0.55 -13.56 5.44 -9.60 -0.05 -13.61 16 10 C 0.20 4.45 6.62 -83.81 -0.55 3.90 16 11 C -0.20 -4.18 9.30 -39.35 -0.37 -4.54 16 12 C -0.09 -1.78 10.02 -39.54 -0.40 -2.18 16 13 C -0.02 -0.49 7.25 -39.36 -0.29 -0.78 16 14 F -0.16 -3.24 16.75 2.25 0.04 -3.20 16 15 C -0.09 -1.76 5.50 -104.59 -0.58 -2.33 16 16 C 0.28 4.99 3.91 36.00 0.14 5.13 16 17 O -0.37 -6.00 9.96 -59.04 -0.59 -6.59 16 18 C 0.01 0.16 7.95 38.16 0.30 0.47 16 19 C 0.02 0.24 8.07 38.16 0.31 0.54 16 20 O -0.37 -6.34 11.20 -59.04 -0.66 -7.00 16 21 C -0.18 -3.88 9.22 -39.34 -0.36 -4.25 16 22 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 23 H 0.40 9.96 7.90 -40.82 -0.32 9.64 16 24 H 0.12 2.59 5.96 -52.49 -0.31 2.28 16 25 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 26 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.12 2.47 7.13 -52.49 -0.37 2.10 16 LS Contribution 273.86 15.07 4.13 4.13 Total: -1.00 -28.19 273.86 -6.44 -34.63 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -2.98 Total: 11.27 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.03 Total: -11.39 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.67 Total: -36.34 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.25 Total: -13.58 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.19 -6.44 -34.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186562.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.212 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds