Wall clock time and date at job start Sun Mar 29 2020 23:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99965 * 2 1 4 4 H 1.48501 * 109.46712 * 269.99922 * 3 2 1 5 5 H 1.48492 * 109.46909 * 29.99904 * 3 2 1 6 6 H 1.48504 * 109.46856 * 150.00152 * 3 2 1 7 7 C 1.38775 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.36842 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.39375 * 119.99986 * 179.97438 * 9 7 2 11 11 C 1.39084 * 120.06507 * 0.02562 * 10 9 7 12 12 C 1.38019 * 119.93701 * 180.02562 * 11 10 9 13 13 C 1.38554 * 120.06360 * 0.02562 * 12 11 10 14 14 F 1.35095 * 119.93506 * 179.97438 * 13 12 11 15 15 C 1.38514 * 120.12824 * 359.97438 * 13 12 11 16 16 C 1.50694 * 119.96439 * 179.97438 * 15 13 12 17 17 O 1.43758 * 109.62994 * 194.36906 * 16 15 13 18 18 C 1.44791 * 104.81187 * 215.81160 * 17 16 15 19 19 C 1.54909 * 101.72513 * 36.10181 * 18 17 16 20 20 O 1.43365 * 109.63192 * 75.00780 * 16 15 13 21 21 C 1.38066 * 120.06297 * 359.72451 * 15 13 12 22 22 H 0.96991 * 119.99726 * 359.97438 * 1 2 3 23 23 H 0.97005 * 120.00073 * 359.97438 * 9 7 2 24 24 H 1.08000 * 120.03276 * 0.02562 * 11 10 9 25 25 H 1.08005 * 119.96472 * 180.02562 * 12 11 10 26 26 H 1.09001 * 109.63266 * 314.60932 * 16 15 13 27 27 H 1.09001 * 110.97239 * 277.98962 * 18 17 16 28 28 H 1.09006 * 111.00555 * 154.22492 * 18 17 16 29 29 H 1.08997 * 110.69383 * 206.04012 * 19 18 17 30 30 H 1.09001 * 110.69546 * 82.83097 * 19 18 17 31 31 H 1.07994 * 120.02831 * 180.29767 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0100 -1.2018 0.0005 8 1 3.0900 -1.2019 0.0001 9 7 1.3258 -2.3869 0.0005 10 6 2.0227 -3.5939 0.0005 11 6 3.4135 -3.5955 0.0011 12 6 4.1009 -4.7923 0.0005 13 6 3.4068 -5.9915 -0.0011 14 9 4.0823 -7.1614 -0.0021 15 6 2.0217 -5.9930 -0.0016 16 6 1.2705 -7.2993 -0.0039 17 8 -0.1072 -7.0636 -0.3401 18 6 -0.8512 -8.0140 0.4596 19 6 -0.0229 -8.0408 1.7684 20 8 1.3327 -7.8931 1.2995 21 6 1.3287 -4.7989 0.0052 22 1 -0.4849 0.8400 0.0004 23 1 0.3557 -2.3869 0.0005 24 1 3.9551 -2.6611 0.0019 25 1 5.1810 -4.7941 0.0014 26 1 1.7132 -7.9751 -0.7357 27 1 -0.8651 -8.9958 -0.0137 28 1 -1.8647 -7.6587 0.6464 29 1 -0.1502 -8.9918 2.2854 30 1 -0.2991 -7.2088 2.4162 31 1 0.2488 -4.8007 0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186562.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:35 Heat of formation + Delta-G solvation = -120.184722 kcal Electronic energy + Delta-G solvation = -18331.596686 eV Core-core repulsion = 15105.925625 eV Total energy + Delta-G solvation = -3225.671061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.44325 -41.45571 -39.85134 -36.72150 -36.05040 -33.77988 -32.78568 -30.44296 -29.38077 -26.56174 -25.88584 -24.21066 -23.24875 -21.95543 -19.69433 -18.78307 -18.27798 -17.90944 -17.49013 -17.14951 -16.27192 -16.17953 -16.00891 -15.58114 -15.39709 -14.80069 -14.59481 -14.20822 -13.97785 -13.93737 -13.69066 -13.52979 -13.05734 -12.87527 -12.60244 -12.38460 -12.08472 -11.76278 -11.64607 -11.18428 -10.72419 -10.54033 -9.82648 -8.49732 -8.48763 -5.72489 0.42900 0.65071 1.43653 1.48093 1.55689 2.27468 2.46689 2.75982 2.94388 3.28989 3.37251 3.66151 3.74393 3.79447 4.03674 4.11763 4.20493 4.29507 4.55396 4.60685 4.69589 4.75391 4.93330 5.06880 5.13039 5.29805 5.50277 5.56978 5.62192 5.82929 6.06184 6.25545 6.80074 7.44621 7.59134 8.69442 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.005697 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.614583 B = 4913.324455 C = 5695.496979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.030 4.030 3 Si 0.999 3.001 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.319 4.319 8 H 0.109 0.891 9 N -0.578 5.578 10 C 0.185 3.815 11 C -0.203 4.203 12 C -0.085 4.085 13 C -0.022 4.022 14 F -0.156 7.156 15 C -0.093 4.093 16 C 0.287 3.713 17 O -0.390 6.390 18 C 0.012 3.988 19 C 0.012 3.988 20 O -0.395 6.395 21 C -0.187 4.187 22 H 0.275 0.725 23 H 0.393 0.607 24 H 0.128 0.872 25 H 0.149 0.851 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -12.268 1.530 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.228 4.228 3 Si 0.822 3.178 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.448 4.448 8 H 0.127 0.873 9 N -0.181 5.181 10 C 0.067 3.933 11 C -0.227 4.227 12 C -0.105 4.105 13 C -0.045 4.045 14 F -0.136 7.136 15 C -0.095 4.095 16 C 0.192 3.808 17 O -0.311 6.311 18 C -0.064 4.064 19 C -0.063 4.063 20 O -0.317 6.317 21 C -0.211 4.211 22 H 0.084 0.916 23 H 0.226 0.774 24 H 0.146 0.854 25 H 0.166 0.834 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.137 -11.740 1.491 11.835 hybrid contribution -0.307 0.721 -0.007 0.784 sum -0.170 -11.019 1.484 11.120 Atomic orbital electron populations 1.69799 1.07409 1.29205 1.50498 1.26183 0.96519 1.02993 0.97148 0.84810 0.78082 0.76347 0.78527 1.19868 1.20766 1.18242 1.20063 0.93558 0.83350 1.47851 0.87327 1.41003 1.07686 1.02212 1.67239 1.18198 0.92437 0.86191 0.96519 1.20485 0.92096 0.98047 1.12104 1.20856 1.00526 0.89986 0.99088 1.16928 0.88815 0.81345 1.17405 1.91346 1.80258 1.46496 1.95450 1.19670 0.92171 0.95010 1.02680 1.22420 0.83226 0.90221 0.84971 1.89265 1.16948 1.59608 1.65243 1.24718 0.98077 0.94546 0.89037 1.24491 0.79828 1.04577 0.97452 1.88949 1.28403 1.81834 1.32474 1.19993 0.99176 0.89689 1.12280 0.91581 0.77388 0.85402 0.83380 0.88364 0.88303 0.85122 0.84941 0.91104 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.45 13.05 21.64 0.28 -50.16 16 2 C -0.03 -1.51 5.50 84.85 0.47 -1.04 16 3 Si 1.00 40.31 29.55 68.60 2.03 42.33 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.32 -16.37 9.56 84.04 0.80 -15.57 16 8 H 0.11 5.26 5.68 -2.91 -0.02 5.25 16 9 N -0.58 -29.01 5.44 -184.27 -1.00 -30.02 16 10 C 0.19 8.46 6.62 38.34 0.25 8.71 16 11 C -0.20 -8.52 9.30 22.42 0.21 -8.31 16 12 C -0.08 -3.19 10.02 22.29 0.22 -2.97 16 13 C -0.02 -0.85 7.25 22.41 0.16 -0.69 16 14 F -0.16 -5.86 16.75 44.97 0.75 -5.11 16 15 C -0.09 -3.67 5.50 -19.84 -0.11 -3.78 16 16 C 0.29 9.60 3.91 71.23 0.28 9.88 16 17 O -0.39 -12.15 9.96 -126.22 -1.26 -13.41 16 18 C 0.01 0.23 7.95 72.63 0.58 0.81 16 19 C 0.01 0.26 8.07 72.63 0.59 0.85 16 20 O -0.39 -12.60 11.20 -126.22 -1.41 -14.02 16 21 C -0.19 -7.95 9.22 22.42 0.21 -7.74 16 22 H 0.27 14.08 8.31 -92.72 -0.77 13.31 16 23 H 0.39 20.38 7.90 -92.70 -0.73 19.65 16 24 H 0.13 5.24 5.96 -2.91 -0.02 5.22 16 25 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 26 H 0.10 3.09 8.09 -2.39 -0.02 3.07 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 5.03 7.13 -2.91 -0.02 5.01 16 Total: -1.00 -60.53 273.86 3.49 -57.04 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.44 Total: 33.18 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.66 Total: -19.85 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -0.72 Total: -80.18 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -2.67 Total: -27.42 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.75 Total: -5.11 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Total: -60.53 3.49 -57.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186562.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.144 kcal (2) G-P(sol) polarization free energy of solvation -60.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds