Wall clock time and date at job start Sun Mar 29 2020 23:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86792 * 120.00080 * 2 1 4 4 H 1.48498 * 109.47272 * 269.99723 * 3 2 1 5 5 H 1.48502 * 109.47278 * 30.00425 * 3 2 1 6 6 H 1.48503 * 109.47152 * 150.00073 * 3 2 1 7 7 C 1.38773 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99542 * 179.97438 * 7 2 1 9 9 N 1.36810 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.39345 * 119.99630 * 179.97438 * 9 7 2 11 11 C 1.38771 * 120.04333 * 359.97438 * 10 9 7 12 12 C 1.38384 * 120.50907 * 179.97438 * 11 10 9 13 13 C 1.38007 * 120.22000 * 0.02562 * 12 11 10 14 14 C 1.39212 * 119.90944 * 359.97438 * 13 12 11 15 15 C 1.47547 * 133.95359 * 179.97438 * 14 13 12 16 16 C 1.39088 * 134.00523 * 359.97198 * 15 14 13 17 17 C 1.37894 * 119.72860 * 179.97438 * 16 15 14 18 18 C 1.38605 * 120.12803 * 0.02747 * 17 16 15 19 19 C 1.37876 * 120.61836 * 0.02562 * 18 17 16 20 20 C 1.39012 * 120.08329 * 359.95499 * 19 18 17 21 21 O 1.35097 * 132.35650 * 180.02562 * 20 19 18 22 22 C 1.35132 * 111.52656 * 180.02562 * 21 20 19 23 23 H 0.97002 * 119.99907 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00693 * 359.97438 * 9 7 2 25 25 H 1.08008 * 119.74057 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.89087 * 180.02562 * 12 11 10 27 27 H 1.08004 * 120.04912 * 179.97438 * 13 12 11 28 28 H 1.08001 * 120.13535 * 0.02562 * 16 15 14 29 29 H 1.07994 * 119.93845 * 180.29798 * 17 16 15 30 30 H 1.07995 * 119.68859 * 179.97438 * 18 17 16 31 31 H 1.07992 * 119.96299 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0099 -1.2019 -0.0005 8 1 3.0900 -1.2019 -0.0010 9 7 1.3258 -2.3866 -0.0016 10 6 2.0224 -3.5934 -0.0027 11 6 3.4101 -3.5945 -0.0032 12 6 4.1117 -4.7873 -0.0038 13 6 3.4360 -5.9906 -0.0043 14 6 2.0440 -6.0050 -0.0038 15 6 1.0309 -7.0778 -0.0046 16 6 1.0948 -8.4672 -0.0066 17 6 -0.0699 -9.2053 -0.0063 18 6 -1.2992 -8.5651 -0.0045 19 6 -1.3740 -7.1883 -0.0035 20 6 -0.2107 -6.4273 -0.0034 21 8 0.0044 -5.0936 -0.0022 22 6 1.3244 -4.8043 -0.0032 23 1 -0.4850 0.8401 -0.0004 24 1 0.3558 -2.3866 -0.0016 25 1 3.9467 -2.6571 -0.0024 26 1 5.1917 -4.7765 -0.0038 27 1 3.9864 -6.9199 -0.0051 28 1 2.0528 -8.9659 -0.0076 29 1 -0.0242 -10.2843 -0.0030 30 1 -2.2070 -9.1501 -0.0046 31 1 -2.3375 -6.7005 -0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186925.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:27 Heat of formation + Delta-G solvation = 26.515287 kcal Electronic energy + Delta-G solvation = -17264.906048 eV Core-core repulsion = 14476.365601 eV Total energy + Delta-G solvation = -2788.540446 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.17233 -39.47076 -38.43290 -36.78158 -33.97597 -32.68732 -31.20689 -30.19945 -29.28746 -26.71214 -24.39529 -23.85147 -23.11000 -21.43934 -20.01691 -18.83955 -18.53769 -17.34481 -17.08084 -16.77123 -16.38843 -15.90892 -15.51678 -15.15721 -14.71846 -14.47079 -14.00627 -13.95810 -13.52907 -13.17347 -13.06286 -12.91516 -12.66374 -12.28681 -12.09011 -12.04786 -11.94670 -11.66051 -10.82978 -10.36300 -9.62900 -9.02319 -8.51976 -8.37976 -5.76096 -0.14810 0.28920 0.84745 1.04397 1.40205 1.48759 1.54223 1.81191 2.24657 2.71851 2.93296 3.25085 3.28169 3.54291 3.77316 4.03767 4.16984 4.31847 4.40702 4.48402 4.63853 4.72373 4.78546 4.98364 5.15247 5.25449 5.36657 5.41883 5.43967 5.51826 5.62514 5.77664 5.84906 5.88874 6.12813 6.43180 6.73321 7.37089 7.52311 8.66853 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.005557 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.950053 B = 5037.196224 C = 5852.304549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.035 4.035 3 Si 1.006 2.994 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.318 4.318 8 H 0.115 0.885 9 N -0.585 5.585 10 C 0.204 3.796 11 C -0.229 4.229 12 C -0.057 4.057 13 C -0.190 4.190 14 C -0.075 4.075 15 C -0.148 4.148 16 C -0.067 4.067 17 C -0.139 4.139 18 C -0.076 4.076 19 C -0.140 4.140 20 C 0.045 3.955 21 O -0.232 6.232 22 C -0.066 4.066 23 H 0.275 0.725 24 H 0.389 0.611 25 H 0.130 0.870 26 H 0.157 0.843 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.171 0.829 30 H 0.174 0.826 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -15.412 0.012 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.233 4.233 3 Si 0.829 3.171 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.447 4.447 8 H 0.132 0.868 9 N -0.189 5.189 10 C 0.087 3.913 11 C -0.254 4.254 12 C -0.075 4.075 13 C -0.213 4.213 14 C -0.077 4.077 15 C -0.149 4.149 16 C -0.085 4.085 17 C -0.157 4.157 18 C -0.093 4.093 19 C -0.158 4.158 20 C -0.001 4.001 21 O -0.138 6.138 22 C -0.115 4.115 23 H 0.084 0.916 24 H 0.221 0.779 25 H 0.148 0.852 26 H 0.174 0.826 27 H 0.162 0.838 28 H 0.168 0.832 29 H 0.188 0.812 30 H 0.191 0.809 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.303 -14.743 0.020 14.922 hybrid contribution -0.565 1.446 -0.014 1.553 sum 1.738 -13.297 0.005 13.410 Atomic orbital electron populations 1.69850 1.07756 1.29285 1.50473 1.26341 0.96556 1.03401 0.97030 0.84710 0.78067 0.75694 0.78647 1.19676 1.20743 1.17772 1.20137 0.93704 0.83061 1.47795 0.86774 1.41005 1.07610 1.02513 1.67760 1.17392 0.92024 0.82042 0.99872 1.20430 0.89682 0.99886 1.15451 1.20980 1.00425 0.90328 0.95802 1.20195 0.90055 0.99023 1.11983 1.19373 0.94900 0.90037 1.03356 1.19726 0.91394 0.95212 1.08567 1.20890 1.01059 0.89497 0.97008 1.21480 0.90878 1.01730 1.01619 1.21389 1.00162 0.91496 0.96283 1.20377 0.94675 0.94059 1.06715 1.20342 0.97275 0.80697 1.01797 1.83872 1.25283 1.24011 1.80672 1.19205 0.80548 0.95244 1.16546 0.91565 0.77883 0.85236 0.82583 0.83819 0.83195 0.81155 0.80852 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.05 21.64 0.28 -53.49 16 2 C -0.04 -1.88 5.50 84.85 0.47 -1.41 16 3 Si 1.01 41.68 29.55 68.60 2.03 43.70 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.32 -17.25 9.55 84.04 0.80 -16.44 16 8 H 0.11 5.73 5.67 -2.91 -0.02 5.71 16 9 N -0.58 -32.27 5.44 -184.00 -1.00 -33.27 16 10 C 0.20 10.20 6.63 38.44 0.26 10.46 16 11 C -0.23 -9.85 9.28 22.43 0.21 -9.65 16 12 C -0.06 -1.98 10.03 22.25 0.22 -1.76 16 13 C -0.19 -6.70 10.08 22.45 0.23 -6.47 16 14 C -0.07 -3.10 6.38 -20.17 -0.13 -3.23 16 15 C -0.15 -5.41 6.38 -20.15 -0.13 -5.53 16 16 C -0.07 -1.74 10.08 22.39 0.23 -1.51 16 17 C -0.14 -2.75 10.04 22.28 0.22 -2.53 16 18 C -0.08 -1.58 10.01 22.27 0.22 -1.35 16 19 C -0.14 -4.14 10.06 22.37 0.23 -3.91 16 20 C 0.05 1.80 7.34 22.92 0.17 1.96 16 21 O -0.23 -11.21 10.58 -18.83 -0.20 -11.41 16 22 C -0.07 -3.21 7.19 23.06 0.17 -3.05 16 23 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.39 22.88 7.90 -92.71 -0.73 22.15 16 25 H 0.13 5.43 5.92 -2.91 -0.02 5.41 16 26 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -67.92 274.66 4.71 -63.21 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.44 Total: 35.67 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 3.16 Total: -44.42 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -0.72 Total: -86.76 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.20 Total: -11.41 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -67.92 4.71 -63.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186925.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.727 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds