Wall clock time and date at job start Mon Mar 30 2020 00:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47063 * 2 1 4 4 S 1.81407 * 109.47069 * 119.99746 * 2 1 3 5 5 O 1.42098 * 109.46712 * 294.05468 * 4 2 1 6 6 C 1.76201 * 102.99725 * 185.00205 * 4 2 1 7 7 C 1.38331 * 119.91021 * 270.27394 * 6 4 2 8 8 C 1.38046 * 120.09090 * 180.32911 * 7 6 4 9 9 C 1.39081 * 119.90583 * 359.41908 * 8 7 6 10 10 N 1.39308 * 120.08702 * 180.30443 * 9 8 7 11 11 C 1.36854 * 119.99875 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99922 * 359.97438 * 11 10 9 13 13 C 1.38793 * 119.99863 * 179.97438 * 11 10 9 14 14 N 1.31589 * 119.99970 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99875 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46856 * 89.99999 * 15 13 11 17 17 H 1.48493 * 109.47005 * 210.00099 * 15 13 11 18 18 H 1.48494 * 109.47238 * 330.00224 * 15 13 11 19 19 C 1.39083 * 119.82671 * 0.27994 * 9 8 7 20 20 C 1.38053 * 119.90114 * 0.02562 * 19 9 8 21 21 H 1.09002 * 109.47133 * 299.99931 * 1 2 3 22 22 H 1.08995 * 109.46792 * 60.00557 * 1 2 3 23 23 H 1.08999 * 109.46720 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47268 * 239.99583 * 2 1 3 25 25 H 1.09006 * 109.47167 * 299.99788 * 3 2 1 26 26 H 1.08998 * 109.47419 * 59.99676 * 3 2 1 27 27 H 1.09001 * 109.47329 * 180.02562 * 3 2 1 28 28 H 1.08004 * 119.95725 * 0.02562 * 7 6 4 29 29 H 1.08002 * 120.04977 * 179.70269 * 8 7 6 30 30 H 0.96994 * 119.99923 * 359.97438 * 10 9 8 31 31 H 0.97003 * 120.00313 * 179.97438 * 14 13 11 32 32 H 1.07995 * 120.04913 * 180.02562 * 19 9 8 33 33 H 1.08000 * 119.94935 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4812 5 8 1.7777 -0.1098 2.6372 6 6 3.8793 -0.6272 1.3859 7 6 4.6602 -1.5521 0.7163 8 6 6.0281 -1.3808 0.6452 9 6 6.6196 -0.2702 1.2375 10 7 7.9990 -0.0903 1.1625 11 6 8.5792 1.0030 1.7465 12 1 7.9677 1.7265 2.2650 13 6 9.9536 1.1820 1.6722 14 7 10.6986 0.3006 1.0400 15 14 10.7454 2.6746 2.4687 16 1 11.1132 2.3509 3.8705 17 1 11.9658 3.0509 1.7110 18 1 9.7867 3.8086 2.4577 19 6 5.8303 0.6608 1.9044 20 6 4.4638 0.4787 1.9764 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 4.1996 -2.4120 0.2528 29 1 6.6377 -2.1059 0.1264 30 1 8.5483 -0.7403 0.6971 31 1 11.6591 0.4258 0.9877 32 1 6.2858 1.5247 2.3653 33 1 3.8502 1.2009 2.4944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:19 Heat of formation + Delta-G solvation = -46.028830 kcal Electronic energy + Delta-G solvation = -16106.347540 eV Core-core repulsion = 13450.105296 eV Total energy + Delta-G solvation = -2656.242244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02370 -36.92679 -36.57010 -35.39325 -33.85192 -31.60149 -29.93813 -28.05089 -26.63602 -23.58665 -22.86293 -22.34215 -19.66974 -18.73047 -18.18939 -17.25915 -16.62400 -16.25649 -15.92136 -15.41133 -15.06796 -14.85380 -14.26246 -14.12090 -14.02956 -13.71317 -13.54757 -13.22870 -13.05110 -12.97816 -12.73994 -12.51941 -12.15211 -12.14264 -11.96937 -11.79847 -11.57646 -10.80216 -10.68012 -9.65574 -9.19778 -8.61237 -8.59190 -5.84143 0.48438 0.83184 1.29984 1.35061 1.44549 1.47211 2.11154 2.19729 2.80637 3.17496 3.35416 3.37661 4.05142 4.07317 4.17053 4.33193 4.47605 4.69373 4.71035 4.81854 4.89671 4.99037 5.11645 5.13187 5.21167 5.24353 5.35753 5.37701 5.52387 5.71991 5.75904 5.85860 6.41310 6.72107 7.37050 7.52576 8.58306 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.041433 B = 0.004765 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.635100 B = 5875.230382 C = 6108.135842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.428 4.428 3 C -0.145 4.145 4 S 1.398 4.602 5 O -0.929 6.929 6 C -0.570 4.570 7 C 0.026 3.974 8 C -0.258 4.258 9 C 0.212 3.788 10 N -0.572 5.572 11 C -0.327 4.327 12 H 0.096 0.904 13 C -0.022 4.022 14 N -0.922 5.922 15 Si 0.995 3.005 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.267 1.267 19 C -0.261 4.261 20 C -0.007 4.007 21 H 0.034 0.966 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.150 0.850 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.181 0.819 29 H 0.127 0.873 30 H 0.396 0.604 31 H 0.278 0.722 32 H 0.093 0.907 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 -6.330 -5.250 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.544 4.544 3 C -0.203 4.203 4 S 1.597 4.403 5 O -0.925 6.925 6 C -0.672 4.672 7 C 0.006 3.994 8 C -0.283 4.283 9 C 0.092 3.908 10 N -0.174 5.174 11 C -0.457 4.457 12 H 0.113 0.887 13 C -0.222 4.222 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.192 1.192 19 C -0.287 4.287 20 C -0.028 4.028 21 H 0.053 0.947 22 H 0.090 0.910 23 H 0.117 0.883 24 H 0.167 0.833 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.198 0.802 29 H 0.145 0.855 30 H 0.231 0.769 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.170 -6.602 -4.506 17.147 hybrid contribution 2.060 3.166 0.336 3.792 sum -13.111 -3.436 -4.170 14.180 Atomic orbital electron populations 1.21531 0.91104 1.04327 1.01949 1.27666 1.03620 1.04241 1.18907 1.21762 1.00541 0.96598 1.01361 1.67889 0.79274 1.11758 0.81374 1.92906 1.80541 1.75484 1.43605 1.26842 1.17891 1.04511 1.17972 1.20818 0.91295 0.96241 0.91095 1.20755 0.96934 0.99623 1.10957 1.18443 0.83748 0.94645 0.94005 1.41124 1.03127 1.23189 1.49987 1.19952 0.91791 1.02008 1.31919 0.88675 1.26115 0.96395 1.01739 0.97934 1.69756 1.07038 1.36856 1.42338 0.84877 0.77841 0.77338 0.78116 1.19689 1.19841 1.19165 1.20492 0.94304 1.02562 1.11318 1.20501 0.93241 0.95571 0.93450 0.94723 0.91046 0.88303 0.83268 0.91521 0.95155 0.93637 0.80206 0.85461 0.76916 0.91238 0.88928 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.20 71.98 0.66 -1.51 16 2 C -0.43 -8.70 3.42 30.59 0.10 -8.59 16 3 C -0.14 -4.01 8.78 71.98 0.63 -3.38 16 4 S 1.40 33.47 13.11 -56.49 -0.74 32.73 16 5 O -0.93 -35.20 16.77 -148.98 -2.50 -37.70 16 6 C -0.57 -18.42 4.81 22.31 0.11 -18.31 16 7 C 0.03 0.73 9.74 22.25 0.22 0.95 16 8 C -0.26 -9.35 9.90 22.43 0.22 -9.13 16 9 C 0.21 9.69 6.62 38.36 0.25 9.94 16 10 N -0.57 -28.98 5.43 -184.28 -1.00 -29.98 16 11 C -0.33 -17.57 9.56 84.04 0.80 -16.77 16 12 H 0.10 5.10 5.68 -2.91 -0.02 5.08 16 13 C -0.02 -1.14 5.50 84.86 0.47 -0.68 16 14 N -0.92 -49.85 13.05 21.65 0.28 -49.56 16 15 Si 0.99 41.76 29.55 68.60 2.03 43.79 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 C -0.26 -12.15 9.31 22.43 0.21 -11.95 16 20 C -0.01 -0.29 8.21 22.25 0.18 -0.11 16 21 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.04 1.44 6.38 -2.39 -0.02 1.43 16 28 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 31 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.09 4.57 5.96 -2.91 -0.02 4.55 16 33 H 0.09 3.95 7.45 -2.91 -0.02 3.93 16 Total: -1.00 -71.93 290.88 2.31 -69.62 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.38 Total: 30.63 kcal Atomic # 6 Polarization: -63.39 SS G_CDS: 3.86 Total: -59.53 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -0.72 Total: -79.54 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -2.50 Total: -37.70 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 33.47 SS G_CDS: -0.74 Total: 32.73 kcal Total: -71.93 2.31 -69.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.590 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds