Wall clock time and date at job start Sun Mar 29 2020 23:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86806 * 119.99997 * 2 1 4 4 H 1.48498 * 109.46772 * 274.98138 * 3 2 1 5 5 H 1.48494 * 109.47126 * 34.97983 * 3 2 1 6 6 H 1.48496 * 109.46955 * 154.98347 * 3 2 1 7 7 C 1.39895 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99675 * 197.73494 * 7 2 1 9 9 C 1.41159 * 120.00039 * 17.73305 * 7 2 1 10 10 C 1.40861 * 120.16086 * 25.07261 * 9 7 2 11 11 C 1.36382 * 119.82187 * 180.23060 * 10 9 7 12 12 C 1.39471 * 120.16971 * 359.48118 * 11 10 9 13 13 N 1.39257 * 119.83312 * 180.27279 * 12 11 10 14 14 C 1.34772 * 120.00043 * 324.04510 * 13 12 11 15 15 O 1.21498 * 120.00181 * 5.17725 * 14 13 12 16 16 O 1.34651 * 119.99804 * 185.18611 * 14 13 12 17 17 C 1.45206 * 116.99610 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46632 * 179.97438 * 17 16 14 19 19 F 1.39903 * 109.46945 * 65.00329 * 18 17 16 20 20 C 1.39479 * 120.33291 * 0.25074 * 12 11 10 21 21 C 1.36369 * 120.16892 * 0.02562 * 20 12 11 22 22 H 0.97006 * 119.99638 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.09387 * 359.97438 * 10 9 7 24 24 H 1.08005 * 119.91299 * 179.74951 * 11 10 9 25 25 H 0.97007 * 120.00079 * 144.03792 * 13 12 11 26 26 H 1.08995 * 109.47074 * 299.99334 * 17 16 14 27 27 H 1.08994 * 109.47448 * 59.99958 * 17 16 14 28 28 H 1.09000 * 109.46558 * 184.99375 * 18 17 16 29 29 H 1.08994 * 109.47408 * 304.99750 * 18 17 16 30 30 H 1.08002 * 119.91206 * 180.02562 * 20 12 11 31 31 H 1.08007 * 120.08555 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4969 2.6200 0.8026 6 1 3.5890 1.4121 0.5921 7 6 2.0082 -1.2115 0.0005 8 1 3.0498 -1.2336 0.2855 9 6 1.3527 -2.4051 -0.3713 10 6 0.2276 -2.3606 -1.2176 11 6 -0.4033 -3.5176 -1.5686 12 6 0.0694 -4.7435 -1.1007 13 7 -0.5768 -5.9211 -1.4681 14 6 -1.9173 -5.9395 -1.6057 15 8 -2.5529 -4.9092 -1.5017 16 8 -2.5523 -7.0997 -1.8582 17 6 -3.9970 -7.0445 -1.9937 18 6 -4.5365 -8.4479 -2.2770 19 9 -4.2997 -9.2707 -1.1705 20 6 1.1863 -4.7960 -0.2669 21 6 1.8243 -3.6470 0.0973 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1371 -1.4124 -1.5842 24 1 -1.2686 -3.4848 -2.2141 25 1 -0.0620 -6.7282 -1.6251 26 1 -4.4343 -6.6664 -1.0697 27 1 -4.2596 -6.3815 -2.8180 28 1 -5.6086 -8.3936 -2.4664 29 1 -4.0335 -8.8610 -3.1512 30 1 1.5468 -5.7490 0.0912 31 1 2.6893 -3.6893 0.7427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194963091.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:07 Heat of formation + Delta-G solvation = -112.698299 kcal Electronic energy + Delta-G solvation = -17705.264063 eV Core-core repulsion = 14479.917638 eV Total energy + Delta-G solvation = -3225.346425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.78087 -40.22426 -37.94560 -36.16872 -34.51477 -33.04297 -30.92955 -29.52484 -28.93784 -25.20497 -23.34040 -21.74858 -21.27255 -20.13774 -18.40487 -17.34491 -16.90864 -16.75994 -16.19659 -15.58726 -15.40547 -15.15605 -14.76056 -13.99081 -13.52408 -13.08567 -12.77643 -12.66671 -12.13888 -11.89822 -11.57773 -11.53891 -11.19982 -11.16021 -10.97615 -10.58155 -10.52604 -10.19634 -9.97313 -9.64616 -9.28490 -8.77384 -7.56087 -7.08677 -6.77541 -4.33138 2.38169 2.66039 3.02433 3.06378 3.10429 3.10695 3.44783 3.91483 4.26197 4.52656 4.60447 4.62155 4.74864 5.04383 5.35214 5.60147 5.66955 6.13087 6.28538 6.46655 6.76345 6.96741 7.01057 7.12772 7.24116 7.57237 7.63232 7.92061 8.02574 8.15243 8.26223 8.59730 8.81157 8.85267 8.99141 10.15698 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.051175 B = 0.004112 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.010968 B = 6808.167074 C = 7193.270565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.158 4.158 11 C -0.083 4.083 12 C -0.004 4.004 13 N -0.626 5.626 14 C 0.634 3.366 15 O -0.559 6.559 16 O -0.375 6.375 17 C 0.053 3.947 18 C 0.067 3.933 19 F -0.212 7.212 20 C -0.097 4.097 21 C -0.216 4.216 22 H 0.282 0.718 23 H 0.120 0.880 24 H 0.107 0.893 25 H 0.402 0.598 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -10.312 -4.955 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.106 3.894 10 C -0.178 4.178 11 C -0.103 4.103 12 C -0.095 4.095 13 N -0.275 5.275 14 C 0.387 3.613 15 O -0.447 6.447 16 O -0.290 6.290 17 C -0.023 4.023 18 C 0.013 3.987 19 F -0.193 7.193 20 C -0.117 4.117 21 C -0.236 4.236 22 H 0.093 0.907 23 H 0.138 0.862 24 H 0.125 0.875 25 H 0.236 0.764 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.862 -9.703 -4.857 12.333 hybrid contribution 0.387 0.403 0.080 0.565 sum -5.475 -9.299 -4.777 11.801 Atomic orbital electron populations 1.69870 1.07603 1.29389 1.34212 1.25960 0.94735 1.01452 0.92285 0.86276 0.80563 0.80590 0.79171 1.19298 1.20263 1.18523 1.19591 0.98158 0.91259 1.39690 0.90223 1.17692 0.91085 0.92104 0.88564 1.20984 0.99148 0.96713 1.00966 1.20562 0.98849 0.91467 0.99458 1.16995 0.99690 0.83719 1.09096 1.41554 1.02383 1.13510 1.70088 1.18220 0.83638 0.81703 0.77753 1.90999 1.65917 1.32165 1.55612 1.86214 1.22540 1.34675 1.85558 1.23523 0.77154 0.97484 1.04137 1.22109 1.01721 0.87796 0.87107 1.92805 1.96261 1.74123 1.56150 1.20045 0.96671 0.97429 0.97556 1.20547 1.04010 0.92318 1.06708 0.90711 0.86189 0.87472 0.76399 0.90010 0.89449 0.88413 0.89651 0.88922 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.58 10.98 55.55 0.61 -19.97 16 2 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 3 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.03 9.03 -37.85 -0.34 -12.37 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.11 2.88 5.57 -106.80 -0.59 2.29 16 10 C -0.16 -4.22 8.64 -39.26 -0.34 -4.56 16 11 C -0.08 -2.09 8.61 -39.79 -0.34 -2.43 16 12 C 0.00 -0.09 6.30 -83.57 -0.53 -0.62 16 13 N -0.63 -11.82 5.31 -14.14 -0.08 -11.89 16 14 C 0.63 12.28 8.58 54.05 0.46 12.74 16 15 O -0.56 -12.71 13.57 -19.27 -0.26 -12.97 16 16 O -0.37 -5.87 10.27 -40.35 -0.41 -6.29 16 17 C 0.05 0.63 5.93 37.16 0.22 0.85 16 18 C 0.07 0.58 7.93 37.16 0.29 0.87 16 19 F -0.21 -2.58 17.35 2.25 0.04 -2.54 16 20 C -0.10 -2.13 9.90 -39.79 -0.39 -2.53 16 21 C -0.22 -5.20 9.74 -39.26 -0.38 -5.59 16 22 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 23 H 0.12 3.31 6.19 -52.48 -0.32 2.98 16 24 H 0.11 2.69 6.24 -52.48 -0.33 2.36 16 25 H 0.40 6.11 8.93 -40.82 -0.36 5.74 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -30.94 279.99 -6.05 -36.98 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.10 Total: 8.53 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -2.03 Total: -9.57 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.53 Total: -31.86 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.68 Total: -19.26 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.94 -6.05 -36.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194963091.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.714 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds