Wall clock time and date at job start Sun Mar 29 2020 23:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86809 * 119.99772 * 2 1 4 4 H 1.48495 * 109.46863 * 239.99714 * 3 2 1 5 5 H 1.48503 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46864 * 119.99576 * 3 2 1 7 7 C 1.39927 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99840 * 185.54093 * 7 2 1 9 9 C 1.41401 * 119.99905 * 5.54635 * 7 2 1 10 10 C 1.40780 * 120.21258 * 34.43981 * 9 7 2 11 11 C 1.37642 * 119.88549 * 180.27228 * 10 9 7 12 12 C 1.38539 * 120.31748 * 359.47515 * 11 10 9 13 13 C 1.39241 * 120.43192 * 0.25586 * 12 11 10 14 14 N 1.39962 * 119.94517 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99734 * 145.42461 * 14 13 12 16 16 O 1.21513 * 120.00526 * 354.28437 * 15 14 13 17 17 O 1.34651 * 119.99958 * 174.27922 * 15 14 13 18 18 C 1.45198 * 117.00484 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47314 * 180.02562 * 18 17 15 20 20 F 1.39897 * 109.47077 * 65.00130 * 19 18 17 21 21 C 1.38278 * 120.10435 * 0.02562 * 13 12 11 22 22 H 0.97007 * 120.00198 * 0.02562 * 1 2 3 23 23 H 1.07993 * 120.05631 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.84190 * 179.75632 * 11 10 9 25 25 H 1.08004 * 119.77916 * 180.23317 * 12 11 10 26 26 H 0.96993 * 120.00143 * 325.41606 * 14 13 12 27 27 H 1.09005 * 109.46635 * 300.00666 * 18 17 15 28 28 H 1.09002 * 109.46953 * 60.00080 * 18 17 15 29 29 H 1.09007 * 109.46983 * 184.99596 * 19 18 17 30 30 H 1.08994 * 109.47043 * 304.99907 * 19 18 17 31 31 H 1.08003 * 120.15478 * 179.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6179 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2772 2.7466 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0842 -1.2139 0.0909 9 6 1.3059 -2.4335 -0.1173 10 6 0.1449 -2.5099 -0.9098 11 6 -0.5363 -3.7012 -1.0153 12 6 -0.0791 -4.8293 -0.3537 13 6 1.0709 -4.7701 0.4292 14 7 1.5241 -5.9161 1.0927 15 6 2.8463 -6.1275 1.2459 16 8 3.6463 -5.3796 0.7194 17 8 3.2810 -7.1676 1.9824 18 6 4.7182 -7.3339 2.1047 19 6 5.0180 -8.5590 2.9708 20 9 4.5661 -9.7120 2.3200 21 6 1.7658 -3.5810 0.5522 22 1 -0.4851 0.8401 -0.0004 23 1 -0.2128 -1.6343 -1.4309 24 1 -1.4292 -3.7580 -1.6203 25 1 -0.6183 -5.7605 -0.4455 26 1 0.8866 -6.5581 1.4424 27 1 5.1532 -7.4736 1.1151 28 1 5.1484 -6.4463 2.5687 29 1 6.0929 -8.6328 3.1361 30 1 4.5089 -8.4596 3.9294 31 1 2.6576 -3.5341 1.1595 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194966694.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:47 Heat of formation + Delta-G solvation = -114.081592 kcal Electronic energy + Delta-G solvation = -17788.248331 eV Core-core repulsion = 14562.841922 eV Total energy + Delta-G solvation = -3225.406409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.80718 -40.31970 -37.94413 -36.17379 -34.51977 -33.07376 -30.96231 -29.84088 -28.13933 -25.31387 -23.63367 -22.00666 -20.99609 -20.21115 -18.51514 -17.58077 -16.91646 -16.61869 -15.79327 -15.66230 -15.31884 -14.99112 -14.70650 -14.54133 -13.53560 -13.11357 -12.94189 -12.76894 -12.22307 -11.74796 -11.58944 -11.27387 -11.19063 -11.12254 -11.00870 -10.63221 -10.48327 -10.41634 -9.81898 -9.57391 -9.30172 -9.06280 -7.41938 -6.98647 -6.63839 -4.37822 2.28180 2.66743 2.84168 3.10389 3.14376 3.18685 3.41831 3.99398 4.20360 4.47921 4.57477 4.69393 4.72097 5.00087 5.30949 5.57385 5.63371 6.17380 6.29507 6.33469 6.65553 6.96708 6.97199 7.04283 7.25901 7.48374 7.66469 7.89060 8.06202 8.08260 8.23210 8.62856 8.74106 8.93269 8.95455 10.30794 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.004777 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.183403 B = 5860.299825 C = 6639.816082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.155 4.155 11 C -0.096 4.096 12 C -0.246 4.246 13 C 0.157 3.843 14 N -0.642 5.642 15 C 0.642 3.358 16 O -0.549 6.549 17 O -0.373 6.373 18 C 0.052 3.948 19 C 0.067 3.933 20 F -0.212 7.212 21 C -0.202 4.202 22 H 0.279 0.721 23 H 0.120 0.880 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.406 0.594 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -10.469 5.010 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.119 3.881 10 C -0.175 4.175 11 C -0.115 4.115 12 C -0.268 4.268 13 C 0.066 3.934 14 N -0.293 5.293 15 C 0.395 3.605 16 O -0.436 6.436 17 O -0.288 6.288 18 C -0.023 4.023 19 C 0.012 3.988 20 F -0.194 7.194 21 C -0.224 4.224 22 H 0.090 0.910 23 H 0.138 0.862 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.241 0.759 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.263 -10.004 4.800 12.281 hybrid contribution 0.082 0.428 0.222 0.489 sum 5.345 -9.576 5.022 12.062 Atomic orbital electron populations 1.69763 1.07285 1.28996 1.37651 1.25841 0.94881 1.01025 0.92449 0.86292 0.79876 0.80180 0.79852 1.18955 1.20419 1.19137 1.19488 0.94950 0.89990 1.45111 0.90504 1.17484 0.91326 0.91533 0.87768 1.21400 0.98444 0.96317 1.01315 1.20502 0.98596 0.93159 0.99203 1.20079 1.00950 0.98463 1.07287 1.17280 0.96279 0.83695 0.96131 1.42050 1.03388 1.25034 1.58817 1.18095 0.84297 0.79680 0.78477 1.91052 1.54046 1.47694 1.50758 1.86215 1.26454 1.48450 1.67647 1.23568 0.77836 0.98824 1.02117 1.22114 1.00838 0.80056 0.95749 1.92802 1.91311 1.51719 1.83536 1.21113 1.03382 0.91861 1.06008 0.91022 0.86250 0.88628 0.88837 0.75926 0.89952 0.89218 0.88305 0.89547 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.19 10.97 55.55 0.61 -20.58 16 2 C 0.07 1.88 5.31 -17.35 -0.09 1.79 16 3 Si 0.91 19.21 29.56 -169.99 -5.03 14.19 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.72 9.04 -37.75 -0.34 -13.06 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.12 3.33 5.50 -106.85 -0.59 2.74 16 10 C -0.16 -4.02 8.62 -38.84 -0.33 -4.36 16 11 C -0.10 -2.19 10.02 -39.69 -0.40 -2.59 16 12 C -0.25 -5.37 9.97 -39.10 -0.39 -5.76 16 13 C 0.16 3.57 6.25 -83.76 -0.52 3.05 16 14 N -0.64 -12.11 5.34 -14.31 -0.08 -12.19 16 15 C 0.64 12.32 8.47 54.05 0.46 12.77 16 16 O -0.55 -12.40 13.92 -19.28 -0.27 -12.67 16 17 O -0.37 -5.76 10.27 -40.36 -0.41 -6.17 16 18 C 0.05 0.61 5.93 37.16 0.22 0.83 16 19 C 0.07 0.56 7.93 37.16 0.29 0.86 16 20 F -0.21 -2.50 17.35 2.25 0.04 -2.47 16 21 C -0.20 -5.23 8.39 -38.68 -0.32 -5.56 16 22 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 23 H 0.12 3.18 6.48 -52.49 -0.34 2.84 16 24 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 25 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 26 H 0.41 6.15 8.93 -40.82 -0.36 5.79 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.11 2.84 6.51 -52.48 -0.34 2.50 16 LS Contribution 280.90 15.07 4.23 4.23 Total: -1.00 -31.12 280.90 -6.05 -37.17 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.13 Total: 7.76 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.02 Total: -9.28 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.53 Total: -32.76 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.68 Total: -18.84 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.12 -6.05 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194966694.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.909 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds