Wall clock time and date at job start Sun Mar 29 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 119.99987 * 2 1 4 4 H 1.48494 * 109.47299 * 269.99498 * 3 2 1 5 5 H 1.48505 * 109.47468 * 29.99809 * 3 2 1 6 6 H 1.48501 * 109.47338 * 149.99540 * 3 2 1 7 7 C 1.37876 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00302 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99879 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47017 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46760 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00070 * 179.97438 * 11 10 9 13 13 O 1.21520 * 119.99848 * 359.97438 * 12 11 10 14 14 O 1.34666 * 120.00304 * 179.97438 * 12 11 10 15 15 C 1.35975 * 117.00176 * 175.08698 * 14 12 11 16 16 C 1.38697 * 120.03211 * 256.79778 * 15 14 12 17 17 C 1.38146 * 119.96965 * 179.79142 * 16 15 14 18 18 C 1.38463 * 120.02950 * 0.46143 * 17 16 15 19 19 F 1.35099 * 119.97078 * 179.77090 * 18 17 16 20 20 C 1.38460 * 120.05508 * 359.78935 * 18 17 16 21 21 C 1.38137 * 120.03107 * 359.97438 * 20 18 17 22 22 H 0.97004 * 120.00134 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46954 * 59.99766 * 9 7 2 24 24 H 1.09002 * 109.46900 * 299.99873 * 9 7 2 25 25 H 1.09000 * 109.46930 * 59.99914 * 10 9 7 26 26 H 1.09002 * 109.46888 * 299.99521 * 10 9 7 27 27 H 0.96997 * 120.00194 * 359.97438 * 11 10 9 28 28 H 1.07999 * 120.01653 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.98240 * 180.20790 * 17 16 15 30 30 H 1.08000 * 119.98122 * 179.97438 * 20 18 17 31 31 H 1.08007 * 120.01306 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4864 -2.6367 0.0009 12 6 6.1603 -3.8038 0.0014 13 8 5.5527 -4.8562 0.0022 14 8 7.5070 -3.8039 0.0008 15 6 8.1244 -5.0109 0.1050 16 6 8.6844 -5.4023 1.3120 17 6 9.3075 -6.6307 1.4176 18 6 9.3815 -7.4670 0.3166 19 9 9.9952 -8.6661 0.4200 20 6 8.8274 -7.0753 -0.8903 21 6 8.1995 -5.8496 -0.9973 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 3.6584 -3.1502 -0.8893 26 1 3.6578 -3.1506 0.8908 27 1 5.9715 -1.7966 0.0006 28 1 8.6300 -4.7486 2.1700 29 1 9.7407 -6.9370 2.3584 30 1 8.8862 -7.7284 -1.7484 31 1 7.7677 -5.5441 -1.9390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195054659.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:12 Heat of formation + Delta-G solvation = -96.293671 kcal Electronic energy + Delta-G solvation = -17331.377733 eV Core-core repulsion = 14106.742666 eV Total energy + Delta-G solvation = -3224.635067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.17307 -41.20663 -38.81901 -36.87637 -35.13376 -32.92268 -31.53692 -30.58774 -29.56720 -25.39025 -23.54353 -23.22151 -21.26148 -20.91796 -18.81029 -18.04113 -17.58462 -17.20532 -16.85955 -15.85242 -15.60818 -15.08964 -14.55610 -14.25901 -14.12753 -14.01219 -13.92582 -13.39619 -13.12582 -12.67691 -12.30398 -11.90220 -11.58657 -11.31522 -10.88707 -10.66034 -10.49438 -10.23077 -9.98866 -9.47201 -9.41876 -8.88712 -8.80279 -8.66250 -6.16699 -4.17995 0.61078 0.88160 2.29940 2.88002 3.22126 3.30219 3.30857 3.32509 3.93379 4.31512 4.32884 4.41607 4.54024 4.86661 5.01756 5.16091 5.32125 5.53371 5.75667 5.79154 5.91966 6.00154 6.05385 6.22185 6.41410 6.46394 6.74452 7.00419 7.11992 7.56899 7.63516 8.35884 8.49117 8.86681 9.42572 10.96073 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.063428 B = 0.003421 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.338622 B = 8182.765444 C = 8343.536452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.022 4.022 10 C 0.145 3.855 11 N -0.697 5.697 12 C 0.636 3.364 13 O -0.559 6.559 14 O -0.311 6.311 15 C 0.101 3.899 16 C -0.090 4.090 17 C -0.140 4.140 18 C 0.097 3.903 19 F -0.138 7.138 20 C -0.139 4.139 21 C -0.087 4.087 22 H 0.266 0.734 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.405 0.595 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.284 -9.524 0.489 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.025 3.975 11 N -0.355 5.355 12 C 0.389 3.611 13 O -0.446 6.446 14 O -0.224 6.224 15 C 0.059 3.941 16 C -0.108 4.108 17 C -0.159 4.159 18 C 0.078 3.922 19 F -0.116 7.116 20 C -0.158 4.158 21 C -0.105 4.105 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.239 0.761 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.825 -10.008 0.481 22.213 hybrid contribution 0.606 1.081 -0.036 1.240 sum 20.431 -8.927 0.445 22.300 Atomic orbital electron populations 1.69898 1.06306 1.27186 1.50039 1.24984 0.94776 0.99180 0.94235 0.86751 0.80276 0.83468 0.78588 1.20149 1.21206 1.19002 1.20855 0.88320 0.95030 1.52177 0.90488 1.19829 0.98098 0.90776 0.97277 1.21685 0.72747 1.00843 1.02260 1.45232 1.08646 1.05449 1.76174 1.18518 0.79671 0.85609 0.77331 1.91031 1.67537 1.30693 1.55292 1.84310 1.20696 1.30812 1.86546 1.18275 0.96948 0.85266 0.93660 1.21062 0.97661 0.95561 0.96559 1.20980 1.02405 0.93899 0.98649 1.17730 0.97256 0.82118 0.95088 1.91509 1.80496 1.42858 1.96783 1.21000 1.00171 0.97384 0.97257 1.21233 0.97478 0.92659 0.99143 0.92435 0.95645 0.96086 0.91382 0.91344 0.76057 0.83975 0.83858 0.83943 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.96 55.43 0.77 -25.96 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.49 27.47 -169.99 -4.67 15.82 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 7 C -0.53 -14.25 9.66 -34.44 -0.33 -14.58 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 2.81 5.61 -4.04 -0.02 2.79 16 11 N -0.70 -11.31 5.56 -65.27 -0.36 -11.67 16 12 C 0.64 10.68 8.62 54.05 0.47 11.14 16 13 O -0.56 -11.08 15.88 -19.29 -0.31 -11.39 16 14 O -0.31 -4.43 10.08 -24.83 -0.25 -4.68 16 15 C 0.10 1.31 5.14 -39.24 -0.20 1.11 16 16 C -0.09 -0.97 9.98 -39.45 -0.39 -1.36 16 17 C -0.14 -1.35 10.02 -39.53 -0.40 -1.75 16 18 C 0.10 1.01 7.30 -39.42 -0.29 0.73 16 19 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 20 C -0.14 -1.41 10.02 -39.54 -0.40 -1.81 16 21 C -0.09 -1.01 9.57 -39.45 -0.38 -1.39 16 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 24 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.41 5.52 8.58 -40.82 -0.35 5.17 16 28 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 284.69 15.07 4.29 4.29 Total: -1.00 -31.13 284.69 -5.88 -37.02 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.24 Total: 1.84 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.16 Total: -3.85 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.41 Total: -37.63 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.56 Total: -16.07 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.13 -5.88 -37.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195054659.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.278 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds