Wall clock time and date at job start Sun Mar 29 2020 23:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33970 * 125.81379 * 2 1 4 4 C 1.34202 * 110.80797 * 180.02562 * 3 2 1 5 5 C 1.34302 * 109.10483 * 359.73193 * 4 3 2 6 6 C 1.36361 * 125.81087 * 180.02562 * 2 1 3 7 7 C 1.47915 * 127.15722 * 359.97159 * 6 2 1 8 8 C 1.40059 * 119.50672 * 310.00324 * 7 6 2 9 9 C 1.35939 * 121.18988 * 180.02562 * 8 7 6 10 10 C 1.41087 * 120.11331 * 359.97092 * 9 8 7 11 11 C 1.40388 * 120.47745 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99553 * 208.78393 * 11 10 9 13 13 C 1.40228 * 120.00669 * 28.79292 * 11 10 9 14 14 N 1.30672 * 120.00317 * 197.56271 * 13 11 10 15 15 Si 1.86803 * 119.99783 * 17.55792 * 13 11 10 16 16 H 1.48499 * 109.47244 * 270.00453 * 15 13 11 17 17 H 1.48499 * 109.46963 * 30.00181 * 15 13 11 18 18 H 1.48492 * 109.47084 * 150.00511 * 15 13 11 19 19 C 1.46660 * 119.03398 * 0.25965 * 10 9 8 20 20 C 1.43200 * 120.56329 * 179.72684 * 19 10 9 21 21 N 7.07364 * 102.25669 * 202.29973 * 2 1 3 22 22 C 1.39049 * 118.87045 * 359.48358 * 19 10 9 23 23 H 1.09011 * 109.46805 * 269.99780 * 1 2 3 24 24 H 1.09001 * 109.47324 * 29.99330 * 1 2 3 25 25 H 1.08997 * 109.47668 * 150.00495 * 1 2 3 26 26 H 1.07998 * 125.44868 * 179.97438 * 4 3 2 27 27 H 1.08004 * 126.98344 * 180.27953 * 5 4 3 28 28 H 1.07996 * 119.40021 * 359.97438 * 8 7 6 29 29 H 1.08002 * 119.94476 * 179.97438 * 9 8 7 30 30 H 0.97004 * 120.00043 * 355.44702 * 14 13 11 31 31 H 1.07993 * 120.09771 * 180.22173 * 22 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2910 1.0864 0.0000 4 6 3.5872 0.7389 -0.0006 5 6 3.6832 -0.6007 0.0050 6 6 2.3049 -1.1058 -0.0005 7 6 1.8716 -2.5201 -0.0005 8 6 0.9208 -2.9503 0.9335 9 6 0.4986 -4.2421 0.9644 10 6 1.0175 -5.1785 0.0454 11 6 0.5873 -6.5146 0.0708 12 1 1.2498 -7.3015 -0.2585 13 6 -0.7024 -6.8277 0.5236 14 7 -0.9925 -8.0526 0.8741 15 14 -2.0058 -5.4934 0.6257 16 1 -1.9586 -4.8569 1.9665 17 1 -1.7482 -4.4689 -0.4179 18 1 -3.3467 -6.0938 0.4098 19 6 2.0174 -4.7372 -0.9325 20 6 2.5701 -5.6614 -1.8764 21 7 3.0087 -6.3954 -2.6229 22 6 2.4157 -3.4050 -0.9309 23 1 -0.3633 0.0000 1.0278 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5137 26 1 4.4200 1.4265 -0.0011 27 1 4.5902 -1.1870 0.0103 28 1 0.5163 -2.2431 1.6424 29 1 -0.2353 -4.5522 1.6936 30 1 -0.3368 -8.7582 0.7592 31 1 3.1480 -3.0578 -1.6447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243065924.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:09 Heat of formation + Delta-G solvation = 28.496782 kcal Electronic energy + Delta-G solvation = -17178.488534 eV Core-core repulsion = 14390.034012 eV Total energy + Delta-G solvation = -2788.454522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.084 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.07028 -39.71686 -37.20147 -36.12111 -34.20210 -32.64427 -31.93102 -31.50007 -27.98030 -26.34708 -24.21863 -23.16800 -22.05454 -21.02627 -20.22796 -18.84224 -17.41402 -16.92312 -16.64724 -16.40640 -15.89571 -15.34525 -14.97244 -14.68155 -14.46048 -14.02925 -13.97108 -13.77456 -13.56312 -13.50506 -13.49067 -12.99749 -12.68853 -12.55453 -12.22870 -12.07956 -11.73822 -11.46049 -10.91843 -10.51441 -9.76458 -9.64736 -9.43455 -8.91463 -6.72987 0.21953 0.58562 1.10214 1.40440 1.57969 1.72749 1.85064 1.90043 2.15763 2.27947 2.28162 2.60557 3.39185 3.45263 3.95133 4.13967 4.18252 4.35467 4.50065 4.59157 4.78311 4.83259 4.84484 4.99388 5.00676 5.11477 5.21526 5.32907 5.44159 5.56172 5.61814 5.81373 5.89232 5.91959 6.17309 6.38275 6.45359 6.58630 6.80728 7.76059 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.007089 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.466395 B = 3948.790356 C = 4890.007655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 O -0.192 6.192 4 C -0.036 4.036 5 C -0.229 4.229 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.019 4.019 9 C -0.245 4.245 10 C 0.125 3.875 11 C -0.512 4.512 12 H 0.043 0.957 13 C 0.013 3.987 14 N -0.810 5.810 15 Si 1.098 2.902 16 H -0.236 1.236 17 H -0.247 1.247 18 H -0.282 1.282 19 C -0.194 4.194 20 C 0.301 3.699 21 N -0.525 5.525 22 C 0.004 3.996 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.238 0.762 27 H 0.152 0.848 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.282 0.718 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 17.940 2.879 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 O -0.090 6.090 4 C -0.101 4.101 5 C -0.248 4.248 6 C -0.140 4.140 7 C -0.147 4.147 8 C -0.038 4.038 9 C -0.264 4.264 10 C 0.120 3.880 11 C -0.539 4.539 12 H 0.062 0.938 13 C -0.205 4.205 14 N -0.430 5.430 15 Si 0.915 3.085 16 H -0.160 1.160 17 H -0.170 1.170 18 H -0.209 1.209 19 C -0.200 4.200 20 C -0.008 4.008 21 N -0.205 5.205 22 C -0.017 4.017 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.254 0.746 27 H 0.170 0.830 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.782 17.210 2.194 17.367 hybrid contribution 2.199 -1.521 -0.377 2.700 sum 1.417 15.689 1.817 15.857 Atomic orbital electron populations 1.20422 0.83405 1.04474 1.04540 1.23000 0.94668 0.83232 1.06212 1.83745 1.17452 1.35150 1.72660 1.24419 0.84046 0.96333 1.05337 1.23113 0.97173 0.95256 1.09264 1.20086 0.92869 0.92153 1.08868 1.17375 1.04706 0.90895 1.01700 1.20760 0.93130 0.94612 0.95289 1.20873 1.08221 0.94562 1.02751 1.18716 0.88881 0.92431 0.88019 1.20707 1.01111 0.93715 1.38406 0.93844 1.28821 1.01176 1.02174 0.88292 1.70539 1.40350 1.02990 1.29167 0.83402 0.71696 0.72329 0.81071 1.16009 1.17040 1.20914 1.16985 1.11233 0.91236 1.00516 1.26017 0.90966 0.92025 0.91793 1.80968 1.14317 1.10722 1.14468 1.20798 0.95459 0.89718 0.95680 0.88637 0.89299 0.89641 0.74571 0.83009 0.84590 0.85735 0.90710 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 9.51 71.24 0.68 -0.77 16 2 C -0.02 -0.57 7.36 25.25 0.19 -0.39 16 3 O -0.19 -4.77 10.54 1.66 0.02 -4.75 16 4 C -0.04 -0.75 12.04 66.92 0.81 0.05 16 5 C -0.23 -5.99 11.12 23.61 0.26 -5.73 16 6 C -0.14 -4.19 5.74 -18.91 -0.11 -4.30 16 7 C -0.15 -5.04 5.50 -19.98 -0.11 -5.15 16 8 C -0.02 -0.65 8.79 22.18 0.19 -0.46 16 9 C -0.25 -9.73 7.20 22.43 0.16 -9.57 16 10 C 0.12 5.81 5.30 -19.86 -0.11 5.71 16 11 C -0.51 -26.55 8.89 23.28 0.21 -26.35 16 12 H 0.04 2.52 7.61 -2.91 -0.02 2.49 16 13 C 0.01 0.64 5.42 85.35 0.46 1.10 16 14 N -0.81 -41.63 13.65 21.87 0.30 -41.33 16 15 Si 1.10 41.77 24.90 68.60 1.71 43.48 16 16 H -0.24 -7.68 6.44 99.48 0.64 -7.04 16 17 H -0.25 -8.98 7.02 99.48 0.70 -8.28 16 18 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 19 C -0.19 -8.66 5.93 -19.64 -0.12 -8.78 16 20 C 0.30 14.45 14.34 88.34 1.27 15.72 16 21 N -0.53 -26.20 18.53 18.99 0.35 -25.85 16 22 C 0.00 0.16 9.45 22.76 0.22 0.37 16 23 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.86 7.71 -2.39 -0.02 1.85 16 26 H 0.24 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.14 3.70 7.82 -2.91 -0.02 3.68 16 29 H 0.13 4.69 4.39 -2.91 -0.01 4.68 16 30 H 0.28 14.62 8.73 -92.71 -0.81 13.82 16 31 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -59.72 281.49 7.43 -52.29 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.05 Total: 14.70 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 4.00 Total: -38.54 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: 0.65 Total: -67.18 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: 0.02 Total: -4.75 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.71 Total: 43.48 kcal Total: -59.72 7.43 -52.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243065924.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.789 kcal (2) G-P(sol) polarization free energy of solvation -59.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds