Wall clock time and date at job start Sun Mar 29 2020 23:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47098 * 299.99799 * 3 2 1 6 6 H 1.48502 * 109.47347 * 60.00029 * 3 2 1 7 7 C 1.37874 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47438 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47406 * 180.02562 * 11 10 9 13 13 C 1.38178 * 120.35764 * 99.99399 * 12 11 10 14 14 C 1.40165 * 118.32034 * 180.02562 * 13 12 11 15 15 C 1.47602 * 120.53949 * 179.97438 * 14 13 12 16 16 O 1.21484 * 119.99916 * 0.02562 * 15 14 13 17 17 O 1.34720 * 120.00355 * 180.02562 * 15 14 13 18 18 C 1.39615 * 118.92981 * 0.02562 * 14 13 12 19 19 N 1.31649 * 120.58182 * 0.02562 * 18 14 13 20 20 C 1.32183 * 121.84876 * 359.97438 * 19 18 14 21 21 F 1.35099 * 119.48675 * 179.97438 * 20 19 18 22 22 H 0.97000 * 119.99963 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46696 * 60.00061 * 9 7 2 24 24 H 1.08998 * 109.47027 * 300.00690 * 9 7 2 25 25 H 1.09003 * 109.46955 * 59.99932 * 10 9 7 26 26 H 1.08999 * 109.47112 * 300.00298 * 10 9 7 27 27 H 1.09003 * 109.47509 * 59.99968 * 11 10 9 28 28 H 1.09008 * 109.46951 * 299.99968 * 11 10 9 29 29 H 1.08001 * 120.83902 * 0.05051 * 13 12 11 30 30 H 0.96699 * 117.00379 * 179.97438 * 17 15 14 31 31 H 1.07998 * 119.70985 * 179.72096 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9870 -0.0025 12 6 2.4595 -6.1325 -0.0031 13 6 2.7561 -6.7984 1.1708 14 6 3.6733 -7.8572 1.1212 15 6 4.0261 -8.6018 2.3458 16 8 3.5200 -8.2989 3.4079 17 8 4.9094 -9.6172 2.2859 18 6 4.2486 -8.1954 -0.1051 19 7 3.9358 -7.5310 -1.1977 20 6 3.0745 -6.5284 -1.1819 21 9 2.7886 -5.8791 -2.3316 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8727 -3.6047 0.8877 26 1 2.8713 -3.6039 -0.8922 27 1 0.8532 -5.0442 -0.8922 28 1 0.8540 -5.0454 0.8878 29 1 2.2926 -6.5106 2.1028 30 1 5.1092 -10.0748 3.1140 31 1 4.9603 -9.0061 -0.1569 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:13 Heat of formation + Delta-G solvation = -118.329818 kcal Electronic energy + Delta-G solvation = -17560.847969 eV Core-core repulsion = 14335.257343 eV Total energy + Delta-G solvation = -3225.590626 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.10966 -40.96044 -39.62782 -36.44319 -35.41534 -33.18742 -32.34078 -30.77589 -27.21577 -25.33453 -24.27340 -22.85501 -21.39123 -20.22447 -18.69318 -18.21060 -17.38335 -17.09652 -16.29459 -16.21861 -15.82344 -14.66254 -14.48757 -14.20339 -14.04209 -13.62311 -13.36400 -13.31962 -12.99568 -12.43062 -12.01043 -11.91687 -11.42025 -11.13015 -10.87923 -10.85758 -10.55253 -10.16324 -9.97862 -9.76179 -9.48351 -9.18968 -8.86870 -8.36506 -6.01434 -4.03751 0.11243 0.84789 2.15609 2.59191 3.29680 3.30818 3.36062 3.38434 3.42732 4.24785 4.37884 4.45995 4.47782 4.79940 4.97713 5.31764 5.34765 5.55327 5.64203 5.82222 5.90049 6.08971 6.10337 6.34530 6.59129 6.73739 7.03392 7.25992 7.53079 7.64596 7.77397 7.97923 8.40298 9.03145 9.60625 11.09918 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.004305 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.957417 B = 6502.886821 C = 6986.565092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.082 4.082 12 C -0.146 4.146 13 C 0.014 3.986 14 C -0.197 4.197 15 C 0.538 3.462 16 O -0.508 6.508 17 O -0.512 6.512 18 C 0.185 3.815 19 N -0.520 5.520 20 C 0.343 3.657 21 F -0.096 7.096 22 H 0.260 0.740 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.417 0.583 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.411 -19.181 2.331 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.120 4.120 12 C -0.150 4.150 13 C -0.011 4.011 14 C -0.201 4.201 15 C 0.381 3.619 16 O -0.396 6.396 17 O -0.324 6.324 18 C 0.026 3.974 19 N -0.234 5.234 20 C 0.191 3.809 21 F -0.074 7.074 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.178 0.822 30 H 0.277 0.723 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.391 -18.957 1.402 20.395 hybrid contribution 0.189 0.991 1.043 1.451 sum 7.580 -17.967 2.445 19.653 Atomic orbital electron populations 1.69970 1.06042 1.26524 1.50931 1.25015 0.94845 0.99261 0.95290 0.86546 0.80137 0.83799 0.77598 1.19751 1.20977 1.20996 1.21273 0.93079 0.91031 1.50509 0.92666 1.19109 0.93898 0.91105 0.97450 1.21682 0.99263 0.92642 1.00771 1.20821 0.95624 0.91520 1.03990 1.20984 1.01834 1.00583 0.91564 1.21609 0.91242 0.89470 0.98795 1.20037 1.05280 1.01461 0.93308 1.20420 0.75711 0.77572 0.88166 1.90932 1.51654 1.66015 1.31029 1.84524 1.58847 1.45641 1.43387 1.22860 0.94284 0.95288 0.84978 1.67110 1.15622 1.08060 1.32578 1.18376 0.91572 0.88864 0.82039 1.91684 1.90574 1.77761 1.47404 0.93034 0.96337 0.96383 0.93043 0.93050 0.90079 0.90006 0.82178 0.72349 0.80305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.11 5.13 -26.74 -0.14 -2.25 16 11 C -0.08 -1.29 5.08 -27.89 -0.14 -1.43 16 12 C -0.15 -2.05 5.15 -104.47 -0.54 -2.58 16 13 C 0.01 0.17 9.35 -38.88 -0.36 -0.19 16 14 C -0.20 -2.17 5.89 -104.84 -0.62 -2.79 16 15 C 0.54 5.47 8.28 34.55 0.29 5.76 16 16 O -0.51 -6.67 17.20 -19.25 -0.33 -7.00 16 17 O -0.51 -3.33 12.70 -40.55 -0.52 -3.84 16 18 C 0.18 1.96 10.79 -17.12 -0.18 1.77 16 19 N -0.52 -6.99 10.36 -13.20 -0.14 -7.13 16 20 C 0.34 5.02 8.36 -17.22 -0.14 4.88 16 21 F -0.10 -1.52 16.68 2.25 0.04 -1.48 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.28 7.95 -51.93 -0.41 0.86 16 28 H 0.08 1.20 8.03 -51.92 -0.42 0.78 16 29 H 0.16 1.85 7.73 -52.49 -0.41 1.44 16 30 H 0.42 0.87 9.11 45.56 0.42 1.28 16 31 H 0.18 1.33 7.62 -52.49 -0.40 0.93 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -32.94 287.72 -5.74 -38.68 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: -2.45 Total: -4.24 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -2.39 Total: -9.93 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.60 Total: -33.19 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.85 Total: -10.85 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.94 -5.74 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.652 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds