Wall clock time and date at job start Sun Mar 29 2020 23:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47350 * 300.00148 * 3 2 1 6 6 H 1.48495 * 109.47351 * 60.00108 * 3 2 1 7 7 C 1.38953 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99498 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99435 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00377 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99643 * 180.02562 * 10 9 7 13 13 O 1.45196 * 109.47016 * 180.02562 * 12 10 9 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 10 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47128 * 180.02562 * 16 14 13 18 18 C 1.34943 * 126.03868 * 125.00304 * 17 16 14 19 19 C 1.35318 * 107.74756 * 179.97438 * 18 17 16 20 20 C 1.39869 * 107.91874 * 359.97438 * 19 18 17 21 21 N 1.30838 * 108.20133 * 359.73987 * 20 19 18 22 22 H 0.97005 * 120.00218 * 359.97438 * 1 2 3 23 23 H 0.96994 * 120.00293 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.46943 * 60.00331 * 12 10 9 25 25 H 1.08999 * 109.47285 * 300.00471 * 12 10 9 26 26 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 27 27 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 28 28 H 1.08004 * 126.12840 * 359.94912 * 18 17 16 29 29 H 1.07995 * 126.03848 * 179.97438 * 19 18 17 30 30 H 1.07997 * 125.89826 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 8 2.1873 -5.9666 -0.0027 14 6 1.6742 -7.2070 -0.0027 15 8 0.4764 -7.3653 -0.0028 16 6 2.5922 -8.4021 -0.0038 17 7 1.7943 -9.6308 -0.0042 18 6 1.8865 -10.6370 -0.8986 19 6 0.9830 -11.5823 -0.5506 20 6 0.3162 -11.1388 0.5961 21 7 0.8058 -9.9718 0.9280 22 1 -0.4851 0.8401 0.0004 23 1 0.3534 -2.3907 -0.0005 24 1 0.6168 -4.9201 -0.8919 25 1 0.6173 -4.9213 0.8880 26 1 3.2204 -8.3769 -0.8942 27 1 3.2217 -8.3776 0.8857 28 1 2.5604 -10.6799 -1.7415 29 1 0.8077 -12.5144 -1.0671 30 1 -0.4645 -11.6702 1.1200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318364379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:28 Heat of formation + Delta-G solvation = -56.686709 kcal Electronic energy + Delta-G solvation = -17486.480824 eV Core-core repulsion = 14283.483205 eV Total energy + Delta-G solvation = -3202.997619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.25259 -41.45518 -40.04600 -37.62537 -36.05950 -34.47288 -33.44272 -31.08163 -30.41663 -28.53187 -26.53124 -23.21668 -22.00405 -21.48395 -21.41944 -20.10594 -19.03412 -18.47340 -17.94770 -17.56678 -17.25622 -16.51258 -16.11682 -15.80028 -15.46977 -15.08390 -14.61146 -14.45325 -14.10843 -13.66844 -13.60183 -13.55979 -13.22428 -12.95398 -12.48625 -12.11394 -11.94614 -11.91126 -11.60601 -11.52714 -10.56695 -10.43056 -10.14493 -9.55300 -8.54567 -6.05577 0.75009 0.97173 1.25885 1.33392 1.42625 1.56732 1.71709 1.83597 2.00658 2.28226 2.95382 3.10883 3.52050 3.68535 3.98157 4.06262 4.08881 4.13039 4.17354 4.22202 4.69520 4.91004 5.16905 5.19423 5.35335 5.70493 5.86453 6.06312 6.41611 6.54375 6.77283 7.00266 7.36681 7.89374 8.62702 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.074438 B = 0.003432 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.060662 B = 8156.100703 C = 8406.077961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.615 6.615 12 C 0.075 3.925 13 O -0.337 6.337 14 C 0.443 3.557 15 O -0.520 6.520 16 C 0.151 3.849 17 N -0.384 5.384 18 C 0.060 3.940 19 C -0.280 4.280 20 C 0.034 3.966 21 N -0.333 5.333 22 H 0.281 0.719 23 H 0.399 0.601 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.185 0.815 27 H 0.148 0.852 28 H 0.218 0.782 29 H 0.175 0.825 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -19.305 -2.701 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.003 4.003 13 O -0.252 6.252 14 C 0.285 3.715 15 O -0.407 6.407 16 C 0.028 3.972 17 N -0.168 5.168 18 C -0.084 4.084 19 C -0.309 4.309 20 C -0.153 4.153 21 N -0.153 5.153 22 H 0.091 0.909 23 H 0.234 0.766 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.202 0.798 27 H 0.166 0.834 28 H 0.235 0.765 29 H 0.192 0.808 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.685 -18.062 -1.880 18.357 hybrid contribution -0.656 0.346 -0.413 0.849 sum 2.029 -17.716 -2.293 17.978 Atomic orbital electron populations 1.69684 1.07039 1.29723 1.49172 1.26161 0.96580 1.02698 0.95590 0.84775 0.78125 0.76441 0.78423 1.19381 1.19432 1.19517 1.19782 0.92998 0.83291 1.50617 0.89575 1.41761 1.09565 1.04263 1.63942 1.20029 0.88071 0.85256 0.84223 1.90524 1.15252 1.87656 1.56771 1.22478 0.90164 0.82570 1.05072 1.86517 1.40507 1.14606 1.83588 1.24536 0.89363 0.85101 0.72515 1.90725 1.18031 1.86583 1.45388 1.21329 0.89455 0.75328 1.11049 1.48346 1.30708 1.15467 1.22309 1.23354 1.01259 0.87876 0.95880 1.21934 1.02752 1.04389 1.01812 1.24475 1.00334 0.92735 0.97720 1.77455 1.05308 1.17287 1.15258 0.90947 0.76644 0.87729 0.88149 0.79753 0.83445 0.76510 0.80785 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.05 21.66 0.28 -48.46 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.34 -18.90 9.68 84.04 0.81 -18.08 16 8 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 9 N -0.56 -28.63 5.29 -306.97 -1.62 -30.25 16 10 C 0.44 21.22 7.86 87.66 0.69 21.91 16 11 O -0.62 -34.38 16.08 15.72 0.25 -34.12 16 12 C 0.07 2.81 5.94 71.24 0.42 3.23 16 13 O -0.34 -11.82 9.76 -45.11 -0.44 -12.26 16 14 C 0.44 13.19 7.99 71.24 0.57 13.76 16 15 O -0.52 -19.00 15.47 21.98 0.34 -18.66 16 16 C 0.15 2.80 7.10 85.63 0.61 3.41 16 17 N -0.38 -8.51 3.39 -351.80 -1.19 -9.70 16 18 C 0.06 0.93 11.45 83.54 0.96 1.88 16 19 C -0.28 -4.60 10.80 21.99 0.24 -4.36 16 20 C 0.03 0.73 12.03 85.24 1.02 1.76 16 21 N -0.33 -9.39 11.66 -57.03 -0.67 -10.06 16 22 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 23 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 24 H 0.10 3.57 8.13 -2.39 -0.02 3.55 16 25 H 0.10 3.53 8.13 -2.39 -0.02 3.51 16 26 H 0.19 1.68 8.07 -2.38 -0.02 1.66 16 27 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -78.36 283.94 5.22 -73.14 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.45 Total: 23.06 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 5.79 Total: 23.48 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -3.20 Total: -98.47 kcal Atomic # 8 Polarization: -65.20 SS G_CDS: 0.15 Total: -65.05 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -78.36 5.22 -73.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318364379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.453 kcal (2) G-P(sol) polarization free energy of solvation -78.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds