Wall clock time and date at job start Sun Mar 29 2020 23:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86797 * 120.00256 * 2 1 4 4 H 1.48495 * 109.47285 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46927 * 299.99916 * 3 2 1 6 6 H 1.48497 * 109.47226 * 59.99862 * 3 2 1 7 7 C 1.40051 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99646 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99881 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00169 * 5.13544 * 9 7 2 11 11 N 1.34779 * 119.99475 * 185.14281 * 9 7 2 12 12 C 1.46824 * 120.08407 * 354.83846 * 11 9 7 13 13 C 1.53801 * 109.01089 * 123.62328 * 12 11 9 14 14 N 1.47072 * 108.35289 * 44.89940 * 13 12 11 15 15 C 1.33543 * 129.66086 * 125.22850 * 14 13 12 16 16 O 1.21533 * 123.98040 * 12.20487 * 15 14 13 17 17 N 1.34142 * 112.04146 * 191.92919 * 15 14 13 18 18 C 1.34978 * 111.64961 * 357.14875 * 17 15 14 19 19 O 1.21228 * 127.16059 * 177.64279 * 18 17 15 20 20 C 1.47860 * 123.13200 * 311.03791 * 14 13 12 21 21 H 1.09003 * 111.53869 * 287.53078 * 20 14 13 22 22 C 1.47111 * 120.07682 * 174.82719 * 11 9 7 23 23 H 0.97005 * 119.99951 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.55017 * 243.49062 * 12 11 9 25 25 H 1.09006 * 109.54356 * 3.67660 * 12 11 9 26 26 H 1.09010 * 109.87500 * 165.09650 * 13 12 11 27 27 H 1.08998 * 109.88641 * 286.10131 * 13 12 11 28 28 H 0.96997 * 124.16996 * 177.14193 * 17 15 14 29 29 H 1.08996 * 109.75263 * 118.03996 * 22 11 9 30 30 H 1.09001 * 109.74748 * 357.30907 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8821 2.3964 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2749 -2.4805 0.0005 10 8 0.0617 -2.4826 -0.0943 11 7 1.9447 -3.6454 0.1057 12 6 3.4130 -3.6526 0.1063 13 6 3.9100 -4.3481 1.3848 14 7 3.1199 -5.5726 1.5830 15 6 3.5280 -6.8347 1.7377 16 8 4.6812 -7.1545 1.9495 17 7 2.5143 -7.7075 1.6376 18 6 1.3316 -7.0796 1.4675 19 8 0.2458 -7.5943 1.3066 20 6 1.6429 -5.6004 1.5200 21 1 1.1961 -5.1262 2.3939 22 6 1.2064 -4.9126 0.2204 23 1 -0.4850 0.8401 0.0004 24 1 3.7754 -4.1937 -0.7678 25 1 3.7827 -2.6275 0.0798 26 1 4.9662 -4.5983 1.2839 27 1 3.7649 -3.6929 2.2437 28 1 2.6185 -8.6708 1.6819 29 1 1.4385 -5.5525 -0.6309 30 1 0.1352 -4.7133 0.2510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320379990.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:17 Heat of formation + Delta-G solvation = -60.432092 kcal Electronic energy + Delta-G solvation = -18984.817806 eV Core-core repulsion = 15781.657775 eV Total energy + Delta-G solvation = -3203.160031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.33714 -38.60054 -38.27390 -36.24075 -35.16997 -32.97549 -32.57122 -31.32345 -27.68878 -26.52195 -24.38840 -23.30031 -21.43208 -21.04569 -19.22396 -18.07263 -17.18387 -16.68063 -16.02989 -15.90213 -15.49578 -15.09121 -14.95399 -14.50453 -14.15014 -13.89714 -13.67368 -13.19496 -12.58175 -12.07875 -11.84137 -11.39185 -11.25627 -11.21064 -11.08118 -10.77609 -10.37324 -10.35919 -10.30629 -10.07088 -9.12703 -8.97788 -7.80937 -7.54284 -6.36811 -4.83734 1.63407 2.28383 3.00227 3.03717 3.09542 3.12664 3.15974 3.84469 4.06902 4.35455 4.44229 4.73162 4.96058 5.18485 5.32912 5.43278 5.67847 5.72964 5.87147 5.97614 6.10774 6.13102 6.29245 6.51288 7.10656 7.25108 7.29990 7.38178 7.85841 8.08600 8.14471 8.85016 9.14712 10.36045 10.55748 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035512 B = 0.006376 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.269530 B = 4390.499930 C = 5037.105226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.556 3.444 10 O -0.570 6.570 11 N -0.641 5.641 12 C 0.103 3.897 13 C 0.133 3.867 14 N -0.610 5.610 15 C 0.705 3.295 16 O -0.555 6.555 17 N -0.685 5.685 18 C 0.532 3.468 19 O -0.468 6.468 20 C 0.071 3.929 21 H 0.135 0.865 22 C 0.130 3.870 23 H 0.270 0.730 24 H 0.052 0.948 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.428 0.572 29 H 0.055 0.945 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 -7.672 2.739 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.363 3.637 10 O -0.452 6.452 11 N -0.379 5.379 12 C -0.022 4.022 13 C 0.011 3.989 14 N -0.348 5.348 15 C 0.406 3.594 16 O -0.431 6.431 17 N -0.356 5.356 18 C 0.317 3.683 19 O -0.337 6.337 20 C -0.038 4.038 21 H 0.152 0.848 22 C 0.004 3.996 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.135 0.865 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.270 0.730 29 H 0.074 0.926 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.100 -7.745 2.716 10.226 hybrid contribution 0.565 0.184 0.096 0.602 sum 6.665 -7.561 2.812 10.464 Atomic orbital electron populations 1.70006 1.07136 1.27587 1.34440 1.25740 0.94653 1.00452 0.92468 0.86294 0.80462 0.81575 0.78373 1.18620 1.20078 1.20081 1.20971 0.93588 0.88936 1.54452 0.90580 1.18385 0.87032 0.81984 0.76303 1.90624 1.14290 1.85621 1.54627 1.48259 1.04518 1.05495 1.79665 1.22018 0.82786 1.02803 0.94608 1.22290 0.94683 0.81880 1.00040 1.47801 1.06818 1.06595 1.73596 1.15596 0.84194 0.81403 0.78236 1.90986 1.16640 1.80598 1.54839 1.44516 1.09473 1.11765 1.69842 1.20822 0.83458 0.89990 0.73993 1.90828 1.24006 1.73813 1.45087 1.22956 0.82590 0.93515 1.04745 0.84776 1.21256 1.00392 0.86704 0.91257 0.91866 0.93001 0.86511 0.88482 0.89904 0.73045 0.92645 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.43 11.84 55.55 0.66 -20.77 16 2 C 0.09 2.25 5.50 -17.37 -0.10 2.15 16 3 Si 0.91 18.56 29.56 -169.99 -5.02 13.54 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.54 -13.73 8.86 -35.63 -0.32 -14.04 16 8 H 0.08 1.70 5.58 -52.49 -0.29 1.41 16 9 C 0.56 14.31 7.60 -12.99 -0.10 14.21 16 10 O -0.57 -17.06 14.41 5.20 0.07 -16.98 16 11 N -0.64 -12.83 2.91 -173.87 -0.51 -13.34 16 12 C 0.10 1.62 6.52 -3.45 -0.02 1.60 16 13 C 0.13 1.79 7.14 -3.31 -0.02 1.76 16 14 N -0.61 -8.71 3.09 -171.19 -0.53 -9.24 16 15 C 0.70 10.15 8.73 -88.58 -0.77 9.38 16 16 O -0.56 -9.40 17.83 5.34 0.10 -9.31 16 17 N -0.69 -8.33 5.73 -16.00 -0.09 -8.42 16 18 C 0.53 7.37 8.06 -10.62 -0.09 7.28 16 19 O -0.47 -7.55 18.02 5.60 0.10 -7.45 16 20 C 0.07 1.04 4.06 -67.87 -0.28 0.76 16 21 H 0.13 1.92 8.14 -51.93 -0.42 1.50 16 22 C 0.13 2.29 6.05 -3.51 -0.02 2.27 16 23 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.12 1.87 5.20 -51.93 -0.27 1.60 16 26 H 0.10 1.15 8.01 -51.92 -0.42 0.73 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.43 4.08 8.96 -40.82 -0.37 3.71 16 29 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 30 H 0.11 2.22 6.97 -51.93 -0.36 1.86 16 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -33.33 262.71 -5.50 -38.83 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.53 Total: 3.80 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: -1.71 Total: 25.38 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.47 Total: -51.76 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: 0.27 Total: -33.74 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.33 -5.50 -38.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320379990.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.604 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds