Wall clock time and date at job start Sun Mar 29 2020 23:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00130 * 2 1 4 4 H 1.48497 * 109.47290 * 270.00182 * 3 2 1 5 5 H 1.48500 * 109.46889 * 30.00301 * 3 2 1 6 6 H 1.48501 * 109.46922 * 150.00071 * 3 2 1 7 7 C 1.38955 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99797 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99694 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00040 * 180.02562 * 9 7 2 11 11 O 1.21300 * 120.00103 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00242 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47135 * 180.02562 * 12 10 9 14 14 C 1.34235 * 117.00012 * 180.02562 * 13 12 10 15 15 O 1.20827 * 119.99487 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99970 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.39870 * 125.89873 * 124.99889 * 17 16 14 19 19 C 1.35318 * 107.92236 * 179.76106 * 18 17 16 20 20 N 1.34948 * 107.74290 * 0.42279 * 19 18 17 21 21 H 0.97001 * 126.03958 * 179.84649 * 20 19 18 22 22 N 1.30835 * 125.89830 * 305.02686 * 17 16 14 23 23 H 0.97003 * 119.99702 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00043 * 359.97438 * 9 7 2 25 25 H 1.08994 * 109.47288 * 59.99916 * 12 10 9 26 26 H 1.09002 * 109.47139 * 299.99598 * 12 10 9 27 27 H 1.09002 * 109.47553 * 59.99495 * 16 14 13 28 28 H 1.09004 * 109.47119 * 299.99929 * 16 14 13 29 29 H 1.08008 * 126.03860 * 0.02562 * 18 17 16 30 30 H 1.07999 * 126.12849 * 180.26834 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0021 11 8 3.4472 -3.4211 -0.0031 12 6 5.5607 -2.3706 -0.0021 13 8 6.0447 -3.7396 -0.0039 14 6 7.3754 -3.9155 -0.0037 15 8 8.1114 -2.9573 -0.0024 16 6 7.9514 -5.3081 -0.0061 17 6 9.4563 -5.2293 -0.0058 18 6 10.3092 -5.8370 0.9213 19 6 11.5823 -5.5342 0.5767 20 7 11.5362 -4.7546 -0.5238 21 1 12.2999 -4.3839 -0.9930 22 7 10.1906 -4.5801 -0.8725 23 1 -0.4850 0.8401 0.0004 24 1 3.8649 -0.3634 -0.0014 25 1 5.9241 -1.8576 0.8883 26 1 5.9241 -1.8561 -0.8917 27 1 7.6158 -5.8386 -0.8972 28 1 7.6150 -5.8420 0.8828 29 1 10.0056 -6.4444 1.7611 30 1 12.4752 -5.8565 1.0918 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320652013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:39 Heat of formation + Delta-G solvation = -38.642848 kcal Electronic energy + Delta-G solvation = -17456.178678 eV Core-core repulsion = 14253.963500 eV Total energy + Delta-G solvation = -3202.215178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44152 -40.15996 -38.27434 -36.13318 -34.02104 -33.26910 -31.76404 -30.17422 -29.56258 -28.01593 -24.46710 -22.23475 -21.30019 -19.68945 -19.54869 -18.54274 -18.35828 -17.53575 -16.48369 -16.21322 -15.49275 -14.92125 -14.78979 -14.32099 -14.04848 -13.76851 -13.45656 -13.14416 -12.84856 -12.64642 -12.20780 -12.07917 -12.04893 -11.23430 -10.86954 -10.62246 -10.43660 -10.37876 -10.02035 -9.66057 -9.64126 -8.96631 -8.62049 -8.25902 -6.36325 -3.88943 1.66500 2.32317 2.36401 2.63694 2.94344 3.01690 3.06378 3.14708 3.60109 4.06718 4.29094 4.44420 4.61267 4.94065 5.07079 5.14695 5.24994 5.41369 5.46388 5.48877 5.61358 5.71831 5.73741 6.32561 6.62100 7.03362 7.44665 7.48487 7.91138 8.04800 8.51502 8.87053 9.33431 9.69706 10.76070 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.053879 B = 0.003696 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.558849 B = 7573.924332 C = 7965.670033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.449 3.551 11 O -0.557 6.557 12 C 0.059 3.941 13 O -0.325 6.325 14 C 0.460 3.540 15 O -0.500 6.500 16 C -0.031 4.031 17 C 0.080 3.920 18 C -0.262 4.262 19 C 0.054 3.946 20 N -0.476 5.476 21 H 0.439 0.561 22 N -0.262 5.262 23 H 0.275 0.725 24 H 0.373 0.627 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.151 0.849 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.740 -8.156 1.390 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.221 5.221 10 C 0.234 3.766 11 O -0.439 6.439 12 C -0.018 4.018 13 O -0.240 6.240 14 C 0.301 3.699 15 O -0.388 6.388 16 C -0.070 4.070 17 C -0.088 4.088 18 C -0.291 4.291 19 C -0.093 4.093 20 N -0.185 5.185 21 H 0.283 0.717 22 N -0.086 5.086 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.169 0.831 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 22.297 -7.717 0.370 23.598 hybrid contribution 1.149 1.290 0.574 1.820 sum 23.446 -6.428 0.943 24.330 Atomic orbital electron populations 1.69619 1.05645 1.27711 1.48577 1.25034 0.95514 0.98040 0.97318 0.86679 0.79862 0.83883 0.79087 1.19425 1.19980 1.19354 1.19431 0.78711 0.96870 1.48558 0.85993 1.42039 1.07621 1.05737 1.66691 1.19220 0.86992 0.85102 0.85306 1.90603 1.69084 1.30710 1.53453 1.22716 0.94954 0.80631 1.03535 1.86540 1.23079 1.31106 1.83292 1.23393 0.81032 0.92345 0.73121 1.90688 1.60560 1.42774 1.44770 1.19600 0.87292 0.92538 1.07555 1.21573 0.94926 0.97544 0.94736 1.21407 0.91416 1.11286 1.05016 1.22572 0.99876 0.95906 0.90976 1.46384 1.07307 1.41142 1.23640 0.71736 1.77420 0.86488 1.21583 1.23075 0.91427 0.79397 0.89507 0.89472 0.85726 0.85373 0.83124 0.80594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 2 C 0.04 1.22 5.50 -17.46 -0.10 1.12 16 3 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 7 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 8 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 9 N -0.58 -13.99 5.09 -10.96 -0.06 -14.05 16 10 C 0.45 10.55 7.86 -10.99 -0.09 10.47 16 11 O -0.56 -15.41 16.08 -14.12 -0.23 -15.64 16 12 C 0.06 1.10 5.94 36.01 0.21 1.31 16 13 O -0.33 -5.88 9.75 -45.92 -0.45 -6.33 16 14 C 0.46 7.18 7.95 36.00 0.29 7.46 16 15 O -0.50 -9.03 15.31 -18.75 -0.29 -9.32 16 16 C -0.03 -0.34 6.39 -29.04 -0.19 -0.53 16 17 C 0.08 0.96 6.02 -82.41 -0.50 0.46 16 18 C -0.26 -2.42 10.72 -40.01 -0.43 -2.85 16 19 C 0.05 0.40 11.99 -17.22 -0.21 0.19 16 20 N -0.48 -4.35 7.36 30.45 0.22 -4.13 16 21 H 0.44 2.54 8.96 -182.60 -1.64 0.90 16 22 N -0.26 -3.51 12.05 33.67 0.41 -3.10 16 23 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 25 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 26 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 27 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.13 1.05 8.12 -51.93 -0.42 0.62 16 29 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 279.67 15.07 4.21 4.21 Total: -1.00 -37.20 279.67 -5.23 -42.43 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.96 Total: 7.14 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -1.15 Total: 8.81 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 1.35 Total: -45.89 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.96 Total: -31.29 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -37.20 -5.23 -42.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320652013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.785 kcal (2) G-P(sol) polarization free energy of solvation -37.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds