Wall clock time and date at job start Sun Mar 29 2020 22:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00018 * 2 1 4 4 O 1.20823 * 119.99702 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99694 * 180.02562 * 3 2 1 6 6 C 1.50699 * 109.47258 * 180.02562 * 5 3 2 7 7 O 1.33678 * 125.80999 * 270.29450 * 6 5 3 8 8 C 1.34217 * 110.91199 * 180.13514 * 7 6 5 9 9 C 1.34174 * 109.14199 * 359.60507 * 8 7 6 10 10 C 1.36502 * 125.81479 * 89.99224 * 6 5 3 11 11 C 1.47294 * 127.19320 * 0.02562 * 10 6 5 12 12 O 1.21652 * 120.00191 * 359.97438 * 11 10 6 13 13 N 1.34780 * 119.99839 * 179.97438 * 11 10 6 14 14 C 1.36969 * 119.99641 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00222 * 0.02562 * 14 13 11 16 16 C 1.38984 * 119.99537 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00194 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99752 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47101 * 60.00196 * 18 16 14 20 20 H 1.48503 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47009 * 299.99665 * 18 16 14 22 22 H 1.09008 * 109.46975 * 299.99923 * 1 2 3 23 23 H 1.09006 * 109.47550 * 59.99595 * 1 2 3 24 24 H 1.08997 * 109.47426 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47525 * 60.00157 * 5 3 2 26 26 H 1.09000 * 109.47042 * 299.99829 * 5 3 2 27 27 H 1.08002 * 125.43126 * 179.87831 * 8 7 6 28 28 H 1.08002 * 127.01629 * 180.25167 * 9 8 7 29 29 H 0.96997 * 120.00052 * 359.97438 * 13 11 10 30 30 H 0.96991 * 119.99799 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 3.9937 2.7199 0.0002 7 8 4.2097 3.4722 -1.0835 8 6 4.5822 4.7144 -0.7378 9 6 4.6111 4.8087 0.6003 10 6 4.2205 3.4852 1.1075 11 6 4.0994 3.0714 2.5159 12 8 3.7633 1.9346 2.7892 13 7 4.3608 3.9523 3.5019 14 6 4.2476 3.5676 4.8116 15 1 3.9493 2.5584 5.0542 16 6 4.5167 4.4761 5.8284 17 7 4.8802 5.7040 5.5332 18 14 4.3631 3.9514 7.6146 19 1 5.2955 2.8270 7.8821 20 1 4.7025 5.0960 8.4977 21 1 2.9698 3.5139 7.8838 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.9557 0.7809 -0.8908 26 1 3.9563 0.7805 0.8892 27 1 4.8167 5.5123 -1.4268 28 1 4.8684 5.6793 1.1854 29 1 4.6291 4.8586 3.2841 30 1 5.0677 6.3381 6.2428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322811794.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:03 Heat of formation + Delta-G solvation = -109.194953 kcal Electronic energy + Delta-G solvation = -18355.375338 eV Core-core repulsion = 15117.808040 eV Total energy + Delta-G solvation = -3237.567298 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.10499 -40.09317 -37.92715 -36.28579 -34.08666 -32.49316 -32.08360 -31.05017 -28.27566 -26.70403 -25.16440 -22.44750 -21.42335 -20.36424 -18.90232 -17.91972 -17.51872 -17.08057 -16.34045 -16.28518 -15.43025 -15.12651 -14.56172 -14.17468 -13.72993 -13.57507 -13.32557 -13.21845 -12.59566 -12.40722 -12.31522 -11.91711 -11.59706 -11.34992 -11.12201 -10.64468 -10.48035 -10.29988 -10.27555 -9.62373 -9.22179 -8.54690 -8.21740 -8.02704 -6.51212 -3.86496 1.77765 2.48733 2.57810 2.88921 3.21160 3.22400 3.26656 3.32051 4.12162 4.35839 4.75170 4.94532 5.07586 5.17497 5.21059 5.28442 5.32151 5.44414 5.59645 5.66415 5.88636 5.94160 6.35521 6.47589 6.57352 6.78275 7.43721 7.46972 7.97284 8.00003 8.54020 9.08687 9.47150 10.00423 10.66016 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.006439 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.147850 B = 4347.427421 C = 5333.184241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.498 6.498 5 C -0.027 4.027 6 C 0.030 3.970 7 O -0.179 6.179 8 C -0.039 4.039 9 C -0.195 4.195 10 C -0.170 4.170 11 C 0.497 3.503 12 O -0.601 6.601 13 N -0.540 5.540 14 C -0.297 4.297 15 H 0.107 0.893 16 C 0.024 3.976 17 N -0.893 5.893 18 Si 0.935 3.065 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.155 0.845 27 H 0.204 0.796 28 H 0.156 0.844 29 H 0.395 0.605 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -4.799 -11.727 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.385 6.385 5 C -0.064 4.064 6 C -0.022 4.022 7 O -0.076 6.076 8 C -0.105 4.105 9 C -0.215 4.215 10 C -0.174 4.174 11 C 0.285 3.715 12 O -0.490 6.490 13 N -0.173 5.173 14 C -0.427 4.427 15 H 0.125 0.875 16 C -0.179 4.179 17 N -0.533 5.533 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.134 0.866 26 H 0.172 0.828 27 H 0.220 0.780 28 H 0.174 0.826 29 H 0.229 0.771 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.506 -5.152 -11.663 12.994 hybrid contribution -0.068 0.828 0.940 1.254 sum -2.574 -4.324 -10.723 11.845 Atomic orbital electron populations 1.23224 0.76554 1.03352 1.02547 1.86465 1.23263 1.33349 1.84558 1.23386 0.91557 0.81383 0.72191 1.90682 1.66948 1.36288 1.44546 1.19708 0.88609 0.89890 1.08158 1.21334 1.04389 0.92811 0.83670 1.83622 1.67737 1.21425 1.34848 1.23701 1.05213 0.85311 0.96311 1.22994 1.05988 0.98052 0.94437 1.21604 1.07097 0.93555 0.95181 1.16782 0.85523 0.86192 0.82959 1.90551 1.54991 1.19944 1.83491 1.41741 1.57369 1.12720 1.05461 1.19760 1.42986 0.99226 0.80709 0.87538 1.25357 0.96714 0.94957 1.00886 1.69608 1.45006 1.04069 1.34593 0.85851 0.79116 0.78008 0.80903 1.19680 1.20819 1.19741 0.91748 0.92190 0.88256 0.86614 0.82776 0.77958 0.82615 0.77136 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.36 -5.49 10.57 -39.25 -0.41 -5.91 16 3 C 0.47 8.42 7.95 36.00 0.29 8.71 16 4 O -0.50 -10.47 15.78 -18.75 -0.30 -10.76 16 5 C -0.03 -0.44 5.82 -29.04 -0.17 -0.60 16 6 C 0.03 0.57 5.87 -34.93 -0.21 0.37 16 7 O -0.18 -3.01 10.52 7.58 0.08 -2.93 16 8 C -0.04 -0.58 12.03 29.30 0.35 -0.23 16 9 C -0.20 -3.46 10.60 -37.45 -0.40 -3.86 16 10 C -0.17 -3.63 6.31 -103.28 -0.65 -4.28 16 11 C 0.50 12.70 7.76 -12.58 -0.10 12.60 16 12 O -0.60 -16.48 14.42 5.23 0.08 -16.40 16 13 N -0.54 -14.34 5.28 -11.98 -0.06 -14.40 16 14 C -0.30 -8.37 9.68 -14.98 -0.14 -8.52 16 15 H 0.11 3.10 7.15 -52.49 -0.38 2.72 16 16 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 17 N -0.89 -24.22 13.05 55.50 0.72 -23.49 16 18 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H 0.06 0.83 8.13 -51.92 -0.42 0.41 16 23 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.15 2.68 6.48 -51.93 -0.34 2.34 16 27 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.16 2.54 7.74 -52.49 -0.41 2.13 16 29 H 0.39 10.05 7.06 -40.82 -0.29 9.76 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -33.97 279.93 -3.41 -37.38 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -2.65 Total: 10.20 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.06 Total: 6.24 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.66 Total: -37.90 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.56 Total: -36.00 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.97 -3.41 -37.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322811794.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.814 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds