Wall clock time and date at job start Sun Mar 29 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48503 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46845 * 299.99778 * 3 2 1 6 6 H 1.48494 * 109.47325 * 59.99822 * 3 2 1 7 7 C 1.38631 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00221 * 180.02562 * 7 2 1 9 9 O 1.34817 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99804 * 174.96261 * 9 7 2 11 11 C 1.38911 * 119.99909 * 185.07457 * 10 9 7 12 12 C 1.37997 * 120.00370 * 179.73211 * 11 10 9 13 13 C 1.38926 * 119.99793 * 0.54320 * 12 11 10 14 14 N 1.39991 * 120.00124 * 179.70724 * 13 12 11 15 15 C 1.34773 * 120.00031 * 35.14636 * 14 13 12 16 16 O 1.21293 * 120.00293 * 355.48763 * 15 14 13 17 17 C 1.50701 * 120.00046 * 175.49496 * 15 14 13 18 18 C 1.53003 * 109.46993 * 180.02562 * 17 15 14 19 19 F 1.39904 * 109.46874 * 179.97438 * 18 17 15 20 20 C 1.38923 * 119.99488 * 359.72905 * 13 12 11 21 21 C 1.38005 * 119.99790 * 0.02562 * 20 13 12 22 22 H 0.96993 * 120.00124 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.99296 * 0.02562 * 11 10 9 24 24 H 1.08004 * 120.00082 * 180.27467 * 12 11 10 25 25 H 0.96996 * 119.99889 * 215.14766 * 14 13 12 26 26 H 1.09001 * 109.46597 * 299.99571 * 17 15 14 27 27 H 1.08998 * 109.47454 * 59.99850 * 17 15 14 28 28 H 1.09001 * 109.46994 * 299.99200 * 18 17 15 29 29 H 1.08994 * 109.47677 * 59.99822 * 18 17 15 30 30 H 1.08002 * 119.99556 * 179.97438 * 20 13 12 31 31 H 1.08001 * 119.99605 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8910 2.3965 1.2124 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1073 11 6 1.4354 -4.7348 -0.2199 12 6 2.1828 -5.8892 -0.3340 13 6 3.5704 -5.8220 -0.3249 14 7 4.3287 -6.9936 -0.4344 15 6 3.8928 -8.0087 -1.2064 16 8 2.8060 -7.9409 -1.7408 17 6 4.7556 -9.2281 -1.4057 18 6 4.0322 -10.2212 -2.3176 19 9 4.8335 -11.3530 -2.5031 20 6 4.2054 -4.5920 -0.2066 21 6 3.4578 -3.4372 -0.0976 22 1 -0.4850 0.8400 0.0004 23 1 0.3566 -4.7873 -0.2229 24 1 1.6891 -6.8453 -0.4260 25 1 5.1678 -7.0749 0.0453 26 1 5.6993 -8.9343 -1.8652 27 1 4.9514 -9.6963 -0.4410 28 1 3.0884 -10.5151 -1.8585 29 1 3.8368 -9.7529 -3.2822 30 1 5.2842 -4.5398 -0.1991 31 1 3.9515 -2.4811 -0.0052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332381238.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:38 Heat of formation + Delta-G solvation = -91.378641 kcal Electronic energy + Delta-G solvation = -17472.439288 eV Core-core repulsion = 14248.017353 eV Total energy + Delta-G solvation = -3224.421935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.85300 -40.23515 -38.73090 -36.60125 -34.06644 -32.43010 -32.07659 -30.26139 -27.99254 -25.48038 -24.24133 -22.30874 -21.39884 -20.22015 -18.15047 -17.57031 -17.25951 -16.69098 -16.43973 -15.50248 -15.02228 -15.00667 -14.59684 -14.32140 -13.75223 -13.61685 -13.44189 -12.88642 -12.83366 -12.44524 -11.89078 -11.63907 -11.59879 -11.46846 -11.07642 -11.05277 -10.75979 -10.46733 -9.84669 -9.68343 -9.27858 -8.74972 -8.25483 -6.99274 -6.47610 -4.05882 2.00884 2.16015 2.71438 3.09770 3.11364 3.14961 3.17527 3.94220 4.28927 4.45501 4.53732 4.58645 4.89072 5.06232 5.16096 5.29377 5.30769 5.50780 5.68941 5.74325 6.08748 6.16702 6.22326 6.76172 6.79670 6.92064 7.10742 7.18364 7.36485 7.60704 7.73247 7.96768 8.23449 8.97705 9.67533 10.70324 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.062983 B = 0.003671 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.461186 B = 7625.247860 C = 7889.848822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.148 3.852 11 C -0.180 4.180 12 C -0.066 4.066 13 C 0.029 3.971 14 N -0.657 5.657 15 C 0.509 3.491 16 O -0.528 6.528 17 C -0.173 4.173 18 C 0.076 3.924 19 F -0.219 7.219 20 C -0.088 4.088 21 C -0.221 4.221 22 H 0.270 0.730 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.403 0.597 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.671 -13.705 -0.621 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.094 3.906 11 C -0.200 4.200 12 C -0.086 4.086 13 C -0.063 4.063 14 N -0.302 5.302 15 C 0.296 3.704 16 O -0.405 6.405 17 C -0.213 4.213 18 C 0.021 3.979 19 F -0.200 7.200 20 C -0.108 4.108 21 C -0.241 4.241 22 H 0.080 0.920 23 H 0.139 0.861 24 H 0.147 0.853 25 H 0.238 0.762 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.487 -13.480 -1.008 16.514 hybrid contribution 1.099 0.822 0.263 1.397 sum 10.586 -12.657 -0.745 16.517 Atomic orbital electron populations 1.70052 1.05969 1.27629 1.45908 1.25302 0.95852 0.98871 0.96525 0.85639 0.79099 0.80346 0.78278 1.19100 1.20120 1.20132 1.21373 0.91824 0.80831 1.52831 0.88980 1.83992 1.34297 1.11423 1.78175 1.19427 0.90246 0.88145 0.92764 1.20162 0.99781 0.89882 1.10153 1.20735 0.91807 0.98148 0.97935 1.17265 0.90729 0.84716 1.13622 1.43189 1.24877 1.14922 1.47184 1.20339 0.87282 0.84220 0.78606 1.90734 1.21467 1.79944 1.48333 1.22184 1.00719 0.95152 1.03278 1.21672 0.92630 0.82307 1.01329 1.92765 1.76558 1.53924 1.96789 1.20489 0.98427 0.90744 1.01150 1.20980 0.93692 0.98417 1.10961 0.92011 0.86076 0.85308 0.76227 0.87697 0.87748 0.89713 0.89698 0.87133 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.39 -10.84 9.48 30.88 0.29 -10.54 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -4.99 9.76 0.01 0.00 -4.99 16 10 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 11 C -0.18 -3.91 9.98 -39.42 -0.39 -4.31 16 12 C -0.07 -1.28 8.69 -39.41 -0.34 -1.62 16 13 C 0.03 0.50 6.30 -83.62 -0.53 -0.03 16 14 N -0.66 -8.28 5.34 -9.82 -0.05 -8.34 16 15 C 0.51 6.41 7.67 -10.99 -0.08 6.32 16 16 O -0.53 -8.80 13.42 5.55 0.07 -8.72 16 17 C -0.17 -1.40 6.16 -27.88 -0.17 -1.57 16 18 C 0.08 0.69 6.84 37.16 0.25 0.95 16 19 F -0.22 -2.26 17.36 2.25 0.04 -2.22 16 20 C -0.09 -1.54 9.96 -39.41 -0.39 -1.93 16 21 C -0.22 -4.66 9.16 -39.42 -0.36 -5.02 16 22 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 24 H 0.13 2.41 6.23 -52.48 -0.33 2.08 16 25 H 0.40 3.52 8.82 -40.82 -0.36 3.16 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.13 2.74 5.63 -52.49 -0.30 2.45 16 LS Contribution 279.59 15.07 4.21 4.21 Total: -1.00 -32.53 279.59 -4.99 -37.53 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.92 Total: 5.14 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.08 Total: -13.49 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.71 Total: -32.70 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.71 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.53 -4.99 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332381238.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.851 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds