Wall clock time and date at job start Sun Mar 29 2020 23:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99988 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00250 * 3 2 1 6 6 H 1.48493 * 109.46720 * 150.00429 * 3 2 1 7 7 C 1.37871 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99614 * 179.97438 * 11 10 9 13 13 O 1.21355 * 120.00214 * 0.02562 * 12 11 10 14 14 C 1.49376 * 120.00036 * 180.02562 * 12 11 10 15 15 O 1.21360 * 120.00156 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00379 * 179.72999 * 14 12 11 17 17 C 1.39355 * 120.00223 * 179.97438 * 16 14 12 18 18 C 1.42051 * 126.89919 * 359.71163 * 17 16 14 19 19 C 1.35244 * 103.95804 * 179.85149 * 18 17 16 20 20 O 1.34090 * 106.61584 * 0.40305 * 19 18 17 21 21 N 1.20912 * 111.75123 * 359.72220 * 20 19 18 22 22 H 0.97004 * 120.00315 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46564 * 59.99671 * 9 7 2 24 24 H 1.09006 * 109.46863 * 300.00334 * 9 7 2 25 25 H 1.09000 * 109.46986 * 59.99910 * 10 9 7 26 26 H 1.09002 * 109.46857 * 299.99776 * 10 9 7 27 27 H 0.96996 * 120.00499 * 0.02562 * 11 10 9 28 28 H 0.97004 * 119.99647 * 359.97438 * 16 14 12 29 29 H 1.07997 * 128.02107 * 359.97438 * 18 17 16 30 30 H 1.07992 * 126.69508 * 180.08952 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 7 5.4864 -2.6366 -0.0035 12 6 6.1602 -3.8038 -0.0041 13 8 5.5534 -4.8548 -0.0042 14 6 7.6540 -3.8039 -0.0047 15 8 8.2609 -2.7530 -0.0042 16 7 8.3279 -4.9711 0.0001 17 6 9.7214 -4.9712 -0.0010 18 6 10.5744 -3.8353 -0.0127 19 6 11.8198 -4.3624 -0.0052 20 8 11.6721 -5.6951 0.0006 21 7 10.5065 -6.0167 0.0029 22 1 -0.4851 0.8400 -0.0004 23 1 3.8751 -0.6805 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.6577 -3.1498 -0.8925 26 1 3.6585 -3.1510 0.8875 27 1 5.9714 -1.7966 -0.0030 28 1 7.8428 -5.8112 0.0044 29 1 10.2934 -2.7925 -0.0229 30 1 12.7516 -3.8165 -0.0088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337766001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:32 Heat of formation + Delta-G solvation = -0.567236 kcal Electronic energy + Delta-G solvation = -17488.788129 eV Core-core repulsion = 14288.224033 eV Total energy + Delta-G solvation = -3200.564096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.20822 -40.94529 -38.79279 -36.26180 -35.21266 -32.93649 -32.77231 -31.74529 -30.41047 -26.50935 -24.58381 -23.50262 -22.07710 -21.01183 -20.53789 -18.80036 -18.27665 -17.92406 -17.23741 -16.86534 -16.20771 -16.13636 -15.17863 -14.65742 -14.32530 -14.23706 -13.81213 -13.52565 -13.34636 -12.67730 -12.13898 -11.86980 -11.73650 -11.59206 -11.32796 -10.52617 -10.41877 -10.05796 -10.02995 -9.72875 -9.41472 -9.24849 -8.94046 -8.67268 -6.17408 -4.18826 0.85426 1.32517 1.83576 2.09915 2.96393 3.10576 3.22203 3.30573 3.31205 3.36222 4.05159 4.32659 4.34673 4.61188 4.85651 5.15326 5.15479 5.51223 5.84485 5.95747 6.00050 6.29625 6.38453 6.50081 6.94187 7.09794 7.21839 7.50164 7.57440 7.95078 7.97140 8.35577 8.85526 9.42068 10.95302 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.052042 B = 0.003649 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.902193 B = 7672.378950 C = 8189.826060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.126 3.874 11 N -0.684 5.684 12 C 0.507 3.493 13 O -0.519 6.519 14 C 0.520 3.480 15 O -0.494 6.494 16 N -0.609 5.609 17 C 0.242 3.758 18 C -0.227 4.227 19 C -0.049 4.049 20 O 0.101 5.899 21 N -0.384 5.384 22 H 0.266 0.734 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.410 0.590 28 H 0.432 0.568 29 H 0.192 0.808 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.655 -6.242 -0.002 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.335 5.335 12 C 0.285 3.715 13 O -0.396 6.396 14 C 0.302 3.698 15 O -0.366 6.366 16 N -0.262 5.262 17 C -0.007 4.007 18 C -0.250 4.250 19 C -0.130 4.130 20 O 0.039 5.961 21 N -0.099 5.099 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.246 0.754 28 H 0.271 0.729 29 H 0.209 0.791 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 22.203 -7.379 0.006 23.397 hybrid contribution 0.247 1.805 -0.023 1.822 sum 22.450 -5.573 -0.017 23.131 Atomic orbital electron populations 1.69896 1.06306 1.27201 1.50017 1.24985 0.94772 0.99190 0.94202 0.86762 0.80305 0.83486 0.78629 1.20124 1.21181 1.18979 1.20858 0.88345 0.95009 1.52230 0.90491 1.19833 0.98200 0.90776 0.97316 1.21803 0.74078 1.01132 1.02488 1.46201 1.09756 1.07677 1.69907 1.19421 0.86332 0.85673 0.80067 1.90799 1.69036 1.30859 1.48917 1.20678 0.89686 0.82990 0.76443 1.90702 1.69611 1.30833 1.45405 1.42136 1.01834 1.11377 1.70868 1.20609 0.86172 0.91057 1.02862 1.23093 0.90596 1.01771 1.09528 1.26009 1.01176 0.83359 1.02465 1.84832 1.19890 1.23316 1.68096 1.74102 0.89525 1.21523 1.24719 0.92431 0.95642 0.96083 0.90951 0.90926 0.75385 0.72886 0.79059 0.76134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.53 -14.20 9.66 -34.44 -0.33 -14.53 16 8 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 10 C 0.13 2.37 5.61 -4.04 -0.02 2.34 16 11 N -0.68 -10.70 5.55 -60.76 -0.34 -11.03 16 12 C 0.51 7.66 7.89 -11.62 -0.09 7.57 16 13 O -0.52 -8.95 16.48 5.49 0.09 -8.86 16 14 C 0.52 6.90 7.85 -11.62 -0.09 6.81 16 15 O -0.49 -6.84 13.75 5.49 0.08 -6.76 16 16 N -0.61 -7.30 5.41 -11.86 -0.06 -7.36 16 17 C 0.24 2.89 8.17 -154.93 -1.27 1.62 16 18 C -0.23 -2.26 9.86 -39.19 -0.39 -2.64 16 19 C -0.05 -0.34 12.28 29.67 0.36 0.03 16 20 O 0.10 0.96 11.19 17.05 0.19 1.15 16 21 N -0.38 -4.55 12.10 31.18 0.38 -4.17 16 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.55 7.20 -51.93 -0.37 0.17 16 24 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.41 5.78 7.94 -40.82 -0.32 5.45 16 28 H 0.43 4.71 8.29 -40.82 -0.34 4.37 16 29 H 0.19 1.94 6.22 -52.49 -0.33 1.61 16 30 H 0.22 0.44 8.06 -52.49 -0.42 0.01 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -31.60 275.47 -4.06 -35.66 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.61 Total: 4.81 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.04 Total: 2.44 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.75 Total: -48.50 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.36 Total: -14.48 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.60 -4.06 -35.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337766001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.095 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds