Wall clock time and date at job start Sun Mar 29 2020 23:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99988 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00250 * 3 2 1 6 6 H 1.48493 * 109.46720 * 150.00429 * 3 2 1 7 7 C 1.37871 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99614 * 179.97438 * 11 10 9 13 13 O 1.21355 * 120.00214 * 0.02562 * 12 11 10 14 14 C 1.49376 * 120.00036 * 180.02562 * 12 11 10 15 15 O 1.21360 * 120.00156 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00379 * 179.72999 * 14 12 11 17 17 C 1.39355 * 120.00223 * 179.97438 * 16 14 12 18 18 C 1.42051 * 126.89919 * 359.71163 * 17 16 14 19 19 C 1.35244 * 103.95804 * 179.85149 * 18 17 16 20 20 O 1.34090 * 106.61584 * 0.40305 * 19 18 17 21 21 N 1.20912 * 111.75123 * 359.72220 * 20 19 18 22 22 H 0.97004 * 120.00315 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46564 * 59.99671 * 9 7 2 24 24 H 1.09006 * 109.46863 * 300.00334 * 9 7 2 25 25 H 1.09000 * 109.46986 * 59.99910 * 10 9 7 26 26 H 1.09002 * 109.46857 * 299.99776 * 10 9 7 27 27 H 0.96996 * 120.00499 * 0.02562 * 11 10 9 28 28 H 0.97004 * 119.99647 * 359.97438 * 16 14 12 29 29 H 1.07997 * 128.02107 * 359.97438 * 18 17 16 30 30 H 1.07992 * 126.69508 * 180.08952 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 7 5.4864 -2.6366 -0.0035 12 6 6.1602 -3.8038 -0.0041 13 8 5.5534 -4.8548 -0.0042 14 6 7.6540 -3.8039 -0.0047 15 8 8.2609 -2.7530 -0.0042 16 7 8.3279 -4.9711 0.0001 17 6 9.7214 -4.9712 -0.0010 18 6 10.5744 -3.8353 -0.0127 19 6 11.8198 -4.3624 -0.0052 20 8 11.6721 -5.6951 0.0006 21 7 10.5065 -6.0167 0.0029 22 1 -0.4851 0.8400 -0.0004 23 1 3.8751 -0.6805 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.6577 -3.1498 -0.8925 26 1 3.6585 -3.1510 0.8875 27 1 5.9714 -1.7966 -0.0030 28 1 7.8428 -5.8112 0.0044 29 1 10.2934 -2.7925 -0.0229 30 1 12.7516 -3.8165 -0.0088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337766001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:32 Heat of formation + Delta-G solvation = -25.002793 kcal Electronic energy + Delta-G solvation = -17489.847734 eV Core-core repulsion = 14288.224033 eV Total energy + Delta-G solvation = -3201.623701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.98920 -42.06509 -40.00032 -37.34783 -36.58209 -34.83840 -33.58366 -32.54288 -32.17527 -27.95915 -25.98214 -24.41904 -23.02459 -22.64866 -21.69124 -19.76278 -19.28948 -19.01709 -18.72158 -18.03992 -17.30891 -17.27503 -16.47013 -16.22515 -15.98185 -15.38030 -14.85069 -14.79634 -14.59427 -14.21698 -13.40061 -13.10903 -13.03307 -12.95941 -12.56592 -12.24031 -12.20553 -11.77766 -11.51474 -10.97778 -10.79030 -10.73767 -10.33661 -10.10592 -8.29962 -6.37179 -0.17013 0.61240 0.78061 1.22096 1.40656 1.42348 1.53273 1.98111 2.17110 2.36902 2.47109 3.05614 3.12333 3.35609 3.76931 4.20514 4.24163 4.38200 4.56767 4.71930 4.79656 4.90352 5.17052 5.26646 5.37168 5.53482 5.59848 6.07344 6.20943 6.39330 6.69019 6.76247 7.23331 7.27708 8.86411 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.052042 B = 0.003649 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.902193 B = 7672.378950 C = 8189.826060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.537 4.537 8 H 0.035 0.965 9 C -0.017 4.017 10 C 0.141 3.859 11 N -0.678 5.678 12 C 0.512 3.488 13 O -0.542 6.542 14 C 0.531 3.469 15 O -0.498 6.498 16 N -0.603 5.603 17 C 0.217 3.783 18 C -0.253 4.253 19 C -0.012 4.012 20 O 0.102 5.898 21 N -0.406 5.406 22 H 0.268 0.732 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.421 0.579 28 H 0.434 0.566 29 H 0.190 0.810 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.070 -5.077 0.003 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.575 4.575 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.018 3.982 11 N -0.331 5.331 12 C 0.292 3.708 13 O -0.420 6.420 14 C 0.312 3.688 15 O -0.370 6.370 16 N -0.256 5.256 17 C -0.031 4.031 18 C -0.276 4.276 19 C -0.093 4.093 20 O 0.040 5.960 21 N -0.120 5.120 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.259 0.741 28 H 0.274 0.726 29 H 0.207 0.793 30 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 25.657 -6.243 0.011 26.405 hybrid contribution -0.761 1.329 -0.026 1.532 sum 24.896 -4.914 -0.015 25.376 Atomic orbital electron populations 1.70062 1.08506 1.28412 1.51948 1.26015 0.95618 1.03695 0.93770 0.85611 0.79705 0.77740 0.79306 1.19080 1.21364 1.16088 1.21214 0.91292 0.93551 1.51480 0.94625 1.19703 0.94648 0.92794 0.98381 1.21353 0.75985 0.99172 1.01673 1.45909 1.08397 1.08554 1.70195 1.19659 0.87271 0.84930 0.78972 1.90794 1.69856 1.31662 1.49697 1.20041 0.88454 0.83363 0.76907 1.90707 1.69307 1.30991 1.45993 1.41977 1.02360 1.10992 1.70250 1.20904 0.85956 0.92119 1.04079 1.23203 0.91489 1.01340 1.11577 1.26884 1.02056 0.81937 0.98411 1.84801 1.18889 1.24782 1.67504 1.74117 0.90292 1.22103 1.25501 0.92327 0.94366 0.94509 0.91919 0.91920 0.74123 0.72602 0.79286 0.70971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 41.52 27.47 68.60 1.88 43.41 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 7 C -0.54 -29.44 9.66 25.60 0.25 -29.19 16 8 H 0.04 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.02 -0.74 4.16 29.85 0.12 -0.61 16 10 C 0.14 5.22 5.61 86.38 0.48 5.71 16 11 N -0.68 -20.27 5.55 -464.50 -2.58 -22.84 16 12 C 0.51 15.03 7.89 87.25 0.69 15.72 16 13 O -0.54 -18.57 16.48 -3.26 -0.05 -18.63 16 14 C 0.53 13.45 7.85 87.25 0.68 14.14 16 15 O -0.50 -12.91 13.75 -3.28 -0.05 -12.95 16 16 N -0.60 -13.98 5.41 -310.80 -1.68 -15.66 16 17 C 0.22 4.89 8.17 134.16 1.10 5.99 16 18 C -0.25 -4.45 9.86 22.52 0.22 -4.22 16 19 C -0.01 -0.12 12.28 67.13 0.82 0.70 16 20 O 0.10 1.69 11.19 71.17 0.80 2.49 16 21 N -0.41 -9.04 12.10 -56.33 -0.68 -9.72 16 22 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 23 H 0.04 1.53 7.20 -2.39 -0.02 1.52 16 24 H 0.04 1.45 7.57 -2.38 -0.02 1.44 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.42 10.88 7.94 -92.71 -0.74 10.14 16 28 H 0.43 9.36 8.29 -92.71 -0.77 8.59 16 29 H 0.19 3.42 6.22 -2.91 -0.02 3.40 16 30 H 0.27 -0.46 8.06 -2.91 -0.02 -0.48 16 Total: -1.00 -69.78 275.47 2.43 -67.35 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.35 Total: 15.25 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 4.84 Total: 9.06 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -4.64 Total: -105.97 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: 0.70 Total: -29.09 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.41 kcal Total: -69.78 2.43 -67.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337766001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.352 kcal (2) G-P(sol) polarization free energy of solvation -69.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds