Wall clock time and date at job start Sun Mar 29 2020 23:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30646 * 128.63706 * 2 1 4 4 O 1.20839 * 109.61734 * 180.02562 * 3 2 1 5 5 N 1.20900 * 115.90993 * 359.69677 * 4 3 2 6 6 C 1.31602 * 109.17486 * 0.49477 * 5 4 3 7 7 C 1.48283 * 128.70932 * 179.82519 * 6 5 4 8 8 O 1.21505 * 119.99936 * 179.67612 * 7 6 5 9 9 N 1.34770 * 120.00231 * 359.67227 * 7 6 5 10 10 C 1.47583 * 134.49494 * 180.02562 * 9 7 6 11 11 C 1.53945 * 86.11541 * 204.65773 * 10 9 7 12 12 O 1.42903 * 113.74155 * 90.74233 * 11 10 9 13 13 C 1.50704 * 113.74101 * 221.93630 * 11 10 9 14 14 H 1.07996 * 119.99852 * 358.07848 * 13 11 10 15 15 C 1.37883 * 119.99641 * 178.07674 * 13 11 10 16 16 N 1.31510 * 120.00287 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99749 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47046 * 60.00259 * 17 15 13 19 19 H 1.48497 * 109.47521 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47371 * 300.00328 * 17 15 13 21 21 C 1.47935 * 134.50020 * 0.03404 * 9 7 6 22 22 H 1.09001 * 109.47360 * 269.97164 * 1 2 3 23 23 H 1.08996 * 109.47637 * 29.97507 * 1 2 3 24 24 H 1.09002 * 109.46608 * 149.97535 * 1 2 3 25 25 H 1.08996 * 113.76772 * 90.36065 * 10 9 7 26 26 H 1.08991 * 113.86922 * 318.97468 * 10 9 7 27 27 H 0.96700 * 114.00311 * 181.92380 * 12 11 10 28 28 H 0.96996 * 120.00241 * 179.97438 * 16 15 13 29 29 H 1.08997 * 113.86757 * 41.07474 * 21 9 7 30 30 H 1.09004 * 113.76551 * 269.58365 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3227 1.0205 0.0000 4 8 3.4651 0.6267 -0.0005 5 7 3.6102 -0.5736 0.0049 6 6 2.4281 -1.1518 -0.0007 7 6 2.1035 -2.5987 -0.0010 8 8 0.9438 -2.9612 -0.0007 9 7 3.0948 -3.5117 -0.0017 10 6 3.1425 -4.9868 -0.0026 11 6 4.5343 -4.8379 0.6381 12 8 4.5108 -4.8175 2.0668 13 6 5.5634 -5.7876 0.0810 14 1 5.2818 -6.5068 -0.6737 15 6 6.8644 -5.7380 0.5351 16 7 7.2071 -4.8624 1.4545 17 14 8.1401 -6.9146 -0.1559 18 1 8.2633 -6.7064 -1.6211 19 1 9.4514 -6.6596 0.4927 20 1 7.7198 -8.3135 0.1117 21 6 4.5723 -3.4381 -0.0017 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5134 24 1 -0.3632 -0.8898 -0.5142 25 1 3.1628 -5.4250 -1.0004 26 1 2.4053 -5.4523 0.6514 27 1 5.3798 -4.6946 2.4728 28 1 8.1222 -4.8278 1.7742 29 1 4.9754 -2.6661 0.6538 30 1 5.0114 -3.4227 -0.9992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339618873.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:34 Heat of formation + Delta-G solvation = 66.568167 kcal Electronic energy + Delta-G solvation = -18668.183675 eV Core-core repulsion = 15470.530789 eV Total energy + Delta-G solvation = -3197.652886 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.73098 -39.64158 -37.57231 -35.09508 -34.50677 -33.99333 -32.27407 -29.75845 -28.72177 -26.12458 -25.38263 -24.48419 -22.36556 -20.49643 -18.97412 -18.90815 -17.74431 -17.35670 -16.54848 -15.73844 -15.12915 -14.85543 -14.26924 -14.06260 -13.62142 -13.55001 -13.18803 -12.71211 -12.63505 -12.15274 -11.92030 -11.71600 -11.61993 -11.14538 -11.07001 -10.99766 -10.58522 -10.36218 -10.24440 -10.08583 -9.42152 -8.82533 -8.55788 -8.05754 -6.43371 -4.54426 1.00285 1.39024 2.88528 3.14522 3.20929 3.22772 3.31423 3.48400 3.61859 4.01139 4.15943 4.76301 4.82612 4.91209 5.15348 5.37876 5.46312 5.53131 5.85316 5.92618 5.99995 6.24924 6.41504 6.45027 6.64737 6.99978 7.58380 7.74278 8.10664 8.33132 8.48447 8.60798 9.16561 9.35100 10.63793 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.036259 B = 0.005826 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.039124 B = 4804.807840 C = 5243.912373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.054 3.946 3 N -0.366 5.366 4 O 0.335 5.665 5 N -0.310 5.310 6 C -0.030 4.030 7 C 0.612 3.388 8 O -0.541 6.541 9 N -0.613 5.613 10 C 0.117 3.883 11 C 0.239 3.761 12 O -0.572 6.572 13 C -0.540 4.540 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.896 5.896 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.081 3.919 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.393 0.607 28 H 0.275 0.725 29 H 0.077 0.923 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 6.775 -2.958 9.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 N -0.093 5.093 4 O 0.111 5.889 5 N -0.030 5.030 6 C -0.196 4.196 7 C 0.397 3.603 8 O -0.419 6.419 9 N -0.345 5.345 10 C -0.004 4.004 11 C 0.197 3.803 12 O -0.384 6.384 13 C -0.578 4.578 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.736 3.264 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.041 4.041 22 H 0.110 0.890 23 H 0.102 0.898 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.248 0.752 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.544 7.378 -2.921 10.285 hybrid contribution 0.785 -0.818 -0.270 1.165 sum -5.760 6.560 -3.191 9.295 Atomic orbital electron populations 1.20287 0.83155 1.04913 1.04551 1.26191 1.00233 0.85422 0.99296 1.74990 0.91433 1.24276 1.18636 1.85064 1.23124 1.17153 1.63564 1.75529 1.22991 0.92163 1.12354 1.26220 0.87666 0.98584 1.07101 1.16103 0.84723 0.80976 0.78448 1.90741 1.18625 1.79432 1.53131 1.50240 1.08376 1.08185 1.67719 1.23599 0.98922 0.77197 1.00685 1.19843 0.90059 0.89965 0.80426 1.86051 1.37845 1.95603 1.18929 1.21408 0.93380 1.19353 1.23686 0.90949 1.25073 0.98593 0.95065 0.94223 1.69384 1.20258 1.34826 1.29062 0.86369 0.79764 0.81006 0.79279 1.19858 1.20957 1.19810 1.24568 0.75109 1.02747 1.01658 0.89036 0.89756 0.88064 0.88900 0.90478 0.75171 0.91498 0.90408 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.22 36.01 0.37 -0.42 16 2 C 0.05 0.81 7.79 -79.33 -0.62 0.19 16 3 N -0.37 -5.46 12.22 33.75 0.41 -5.05 16 4 O 0.33 5.26 11.65 27.27 0.32 5.58 16 5 N -0.31 -5.49 11.01 33.49 0.37 -5.12 16 6 C -0.03 -0.53 7.49 -80.07 -0.60 -1.13 16 7 C 0.61 12.39 8.08 -12.13 -0.10 12.30 16 8 O -0.54 -11.43 16.69 5.36 0.09 -11.34 16 9 N -0.61 -12.90 3.62 -178.96 -0.65 -13.55 16 10 C 0.12 2.44 8.23 -2.97 -0.02 2.42 16 11 C 0.24 5.61 1.40 -90.84 -0.13 5.48 16 12 O -0.57 -14.45 13.49 -35.23 -0.48 -14.92 16 13 C -0.54 -13.21 8.61 -34.44 -0.30 -13.51 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.07 1.80 5.39 -17.82 -0.10 1.71 16 16 N -0.90 -22.45 11.20 55.43 0.62 -21.83 16 17 Si 0.91 19.14 29.54 -169.99 -5.02 14.12 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C 0.08 1.77 7.43 -2.76 -0.02 1.75 16 22 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.10 1.18 7.31 -51.93 -0.38 0.80 16 25 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 26 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.39 10.06 6.60 45.56 0.30 10.36 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.08 1.76 7.64 -51.93 -0.40 1.37 16 30 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 LS Contribution 273.65 15.07 4.12 4.12 Total: -1.00 -26.85 273.65 -3.85 -30.70 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -2.13 Total: 8.51 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -1.51 Total: 8.78 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.75 Total: -45.56 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.07 Total: -20.68 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.85 -3.85 -30.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339618873.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.272 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds