Wall clock time and date at job start Sun Mar 29 2020 23:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35240 * 126.39584 * 2 1 4 4 N 1.33450 * 107.83611 * 179.74381 * 3 2 1 5 5 C 1.31283 * 108.70856 * 0.42903 * 4 3 2 6 6 C 1.47456 * 125.70745 * 179.83704 * 5 4 3 7 7 O 1.21601 * 119.99986 * 179.68778 * 6 5 4 8 8 N 1.34777 * 119.99987 * 359.69084 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46928 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99980 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99944 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00055 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99682 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00213 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47376 * 59.99761 * 17 15 13 19 19 H 1.48496 * 109.47319 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46921 * 299.99770 * 17 15 13 21 21 O 1.34313 * 126.38937 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47191 * 300.02617 * 1 2 3 24 24 H 1.09001 * 109.47232 * 60.01971 * 1 2 3 25 25 H 1.07995 * 126.07849 * 359.97438 * 3 2 1 26 26 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 27 27 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 28 28 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 29 29 H 0.96996 * 119.99844 * 0.02562 * 12 10 9 30 30 H 0.97002 * 120.00016 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3095 1.0886 0.0000 4 7 3.5746 0.6638 0.0057 5 6 3.5780 -0.6490 -0.0001 6 6 4.7776 -1.5064 -0.0002 7 8 4.6598 -2.7167 -0.0002 8 7 6.0046 -0.9488 -0.0001 9 6 7.1964 -1.8007 -0.0008 10 6 8.4313 -0.9370 -0.0012 11 8 8.3262 0.2714 -0.0015 12 7 9.6525 -1.5072 -0.0013 13 6 10.7759 -0.7213 -0.0023 14 1 10.6823 0.3546 -0.0025 15 6 12.0349 -1.3092 -0.0029 16 7 12.1488 -2.6184 -0.0030 17 14 13.5657 -0.2385 -0.0035 18 1 13.5706 0.6188 1.2090 19 1 14.7738 -1.1020 -0.0047 20 1 13.5695 0.6189 -1.2159 21 8 2.3038 -1.0812 -0.0005 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5142 0.8897 24 1 -0.3634 0.5135 -0.8902 25 1 1.9843 2.1184 -0.0004 26 1 6.0985 0.0167 -0.0005 27 1 7.1934 -2.4304 0.8890 28 1 7.1930 -2.4297 -0.8910 29 1 9.7366 -2.4735 -0.0014 30 1 13.0278 -3.0288 -0.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343760605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:17 Heat of formation + Delta-G solvation = -47.538626 kcal Electronic energy + Delta-G solvation = -17486.710046 eV Core-core repulsion = 14284.109117 eV Total energy + Delta-G solvation = -3202.600928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.61887 -39.58685 -38.12355 -35.29563 -34.46357 -33.73625 -32.79538 -31.40449 -28.88167 -26.92708 -24.66615 -23.54810 -22.09170 -20.66470 -19.72333 -18.52209 -17.90342 -17.15479 -16.61239 -15.64088 -15.43871 -15.29554 -14.72761 -14.51242 -14.09209 -13.94275 -13.74512 -13.44896 -13.39336 -12.76048 -12.25987 -12.06054 -11.64810 -11.63984 -11.10808 -10.86923 -10.51177 -10.44811 -10.29850 -9.63807 -9.17305 -8.89263 -8.66876 -8.11632 -6.52457 -3.94540 0.73125 1.94394 2.07931 3.12130 3.14767 3.21867 3.24899 3.33738 3.71109 4.01796 4.14910 4.41251 4.67662 4.80125 4.87760 4.99635 5.14764 5.15443 5.51335 5.70467 5.77597 5.85086 5.92905 5.99338 6.40659 7.19411 7.45411 7.62403 7.89032 8.09904 8.43321 9.03307 9.36721 9.84622 10.64269 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.062457 B = 0.003620 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.200039 B = 7733.508108 C = 8161.261298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 C -0.041 4.041 4 N -0.430 5.430 5 C 0.146 3.854 6 C 0.612 3.388 7 O -0.524 6.524 8 N -0.673 5.673 9 C 0.109 3.891 10 C 0.427 3.573 11 O -0.592 6.592 12 N -0.547 5.547 13 C -0.306 4.306 14 H 0.106 0.894 15 C 0.027 3.973 16 N -0.895 5.895 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 O -0.166 6.166 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.192 0.808 26 H 0.424 0.576 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.396 0.604 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.711 3.099 -0.005 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.184 4.184 4 N -0.163 5.163 5 C -0.060 4.060 6 C 0.393 3.607 7 O -0.399 6.399 8 N -0.328 5.328 9 C -0.017 4.017 10 C 0.212 3.788 11 O -0.478 6.478 12 N -0.181 5.181 13 C -0.435 4.435 14 H 0.124 0.876 15 C -0.176 4.176 16 N -0.535 5.535 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.197 1.197 21 O -0.049 6.049 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.209 0.791 26 H 0.265 0.735 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.230 0.770 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.053 3.142 0.003 18.325 hybrid contribution 0.235 0.008 -0.002 0.235 sum -17.818 3.150 0.000 18.095 Atomic orbital electron populations 1.20366 0.83287 1.04808 1.04260 1.24056 0.95472 0.84607 1.04381 1.23234 0.87308 1.00716 1.07130 1.70441 1.23737 1.08390 1.13757 1.25386 0.84456 0.89372 1.06810 1.15853 0.80623 0.85492 0.78699 1.90876 1.85855 1.12792 1.50388 1.45300 1.03061 1.12913 1.71575 1.21127 0.83589 0.93010 1.04018 1.19612 0.84431 0.88699 0.86066 1.90535 1.85945 1.14227 1.57120 1.41758 1.04052 1.09797 1.62543 1.19699 0.82809 0.92606 1.48382 0.87624 1.25329 0.99487 0.96134 0.96695 1.69607 1.25736 1.08973 1.49141 0.85860 0.79680 0.79163 0.79205 1.19735 1.20856 1.19741 1.84459 1.16815 1.35867 1.67768 0.90002 0.88819 0.88812 0.79055 0.73527 0.89001 0.89008 0.76975 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.44 36.01 0.38 0.01 16 2 C -0.03 -0.31 7.40 -35.38 -0.26 -0.57 16 3 C -0.04 -0.45 11.80 -17.92 -0.21 -0.66 16 4 N -0.43 -6.43 10.91 -11.80 -0.13 -6.56 16 5 C 0.15 2.31 8.09 -14.03 -0.11 2.20 16 6 C 0.61 10.71 7.82 -12.51 -0.10 10.62 16 7 O -0.52 -10.20 17.11 -0.19 0.00 -10.21 16 8 N -0.67 -11.95 5.52 -62.55 -0.35 -12.30 16 9 C 0.11 1.99 6.15 -5.19 -0.03 1.96 16 10 C 0.43 9.74 7.85 -10.99 -0.09 9.65 16 11 O -0.59 -15.30 15.24 5.54 0.08 -15.21 16 12 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 13 C -0.31 -8.26 9.68 -14.93 -0.14 -8.40 16 14 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 15 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 16 N -0.89 -23.71 13.05 55.50 0.72 -22.99 16 17 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 O -0.17 -2.38 10.79 -0.45 0.00 -2.39 16 22 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.42 7.79 7.11 -40.82 -0.29 7.50 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.40 9.27 7.90 -40.82 -0.32 8.94 16 30 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 282.75 15.07 4.26 4.26 Total: -1.00 -32.30 282.75 -3.82 -36.13 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -2.66 Total: 11.88 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: -0.67 Total: 15.39 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.19 Total: -55.31 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.08 Total: -27.81 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.30 -3.82 -36.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343760605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.413 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds