Wall clock time and date at job start Sun Mar 29 2020 23:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47158 * 17.03686 * 3 2 1 5 5 C 1.37107 * 120.00425 * 84.38782 * 4 3 2 6 6 H 1.07996 * 119.99815 * 213.61167 * 5 4 3 7 7 C 1.38946 * 119.99515 * 33.61255 * 5 4 3 8 8 N 1.31413 * 120.00268 * 24.04873 * 7 5 4 9 9 Si 1.86802 * 119.99737 * 204.04464 * 7 5 4 10 10 H 1.48504 * 109.47127 * 265.01824 * 9 7 5 11 11 H 1.48495 * 109.46907 * 25.01819 * 9 7 5 12 12 H 1.48498 * 109.46936 * 145.01946 * 9 7 5 13 13 C 1.34779 * 119.99794 * 264.38504 * 4 3 2 14 14 O 1.21290 * 120.00214 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00139 * 0.02562 * 13 4 3 16 16 H 1.09001 * 109.39438 * 319.99349 * 15 13 4 17 17 C 1.53134 * 109.40226 * 79.81140 * 15 13 4 18 18 C 1.53432 * 108.38696 * 168.20268 * 17 15 13 19 19 O 1.45430 * 108.04545 * 298.16041 * 18 17 15 20 20 C 1.34210 * 117.18377 * 46.46130 * 19 18 17 21 21 O 1.21509 * 118.45875 * 163.22488 * 20 19 18 22 22 N 1.33732 * 123.08224 * 343.20889 * 20 19 18 23 23 H 1.08999 * 109.47548 * 257.03261 * 3 2 1 24 24 H 1.09010 * 109.46985 * 137.03258 * 3 2 1 25 25 H 0.97004 * 120.00104 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.68201 * 287.83685 * 17 15 13 27 27 H 1.09007 * 109.67823 * 48.39553 * 17 15 13 28 28 H 1.08998 * 109.74376 * 178.53410 * 18 17 15 29 29 H 1.08996 * 109.82036 * 57.82596 * 18 17 15 30 30 H 0.96996 * 118.51971 * 182.28380 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3197 -0.4047 5 6 3.2161 -1.6285 -1.7352 6 1 3.0384 -2.6387 -2.0731 7 6 3.5656 -0.6416 -2.6487 8 7 4.2257 0.4214 -2.2473 9 14 3.0970 -0.8260 -4.4476 10 1 4.2318 -1.4238 -5.1960 11 1 1.9087 -1.7092 -4.5615 12 1 2.7780 0.5087 -5.0153 13 6 3.4296 -2.2309 0.5310 14 8 3.8340 -3.3243 0.1961 15 6 3.2981 -1.8918 1.9935 16 1 3.6224 -0.8641 2.1573 17 6 1.8346 -2.0373 2.4198 18 6 1.7688 -1.9806 3.9517 19 8 2.5326 -3.1011 4.4772 20 6 3.7447 -3.3206 3.9444 21 8 4.5235 -4.0299 4.5499 22 7 4.1354 -2.7955 2.7782 23 1 2.9713 0.2314 1.0014 24 1 2.9710 0.7529 -0.7005 25 1 4.4700 1.1102 -2.8852 26 1 1.2465 -1.2222 1.9980 27 1 1.4434 -2.9926 2.0694 28 1 0.7318 -2.0562 4.2788 29 1 2.1989 -1.0437 4.3056 30 1 5.0144 -3.0249 2.4383 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348134167.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:21 Heat of formation + Delta-G solvation = -90.844854 kcal Electronic energy + Delta-G solvation = -18962.760212 eV Core-core repulsion = 15758.281385 eV Total energy + Delta-G solvation = -3204.478827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.26092 -40.58554 -38.27909 -37.87605 -36.67211 -36.13848 -33.91236 -32.56955 -29.36179 -28.59880 -26.30634 -25.07167 -21.71783 -21.07960 -19.93320 -19.37462 -18.56100 -18.49995 -17.83173 -17.17406 -16.85840 -16.21463 -15.71919 -15.69493 -15.51944 -15.06285 -14.85635 -14.65161 -13.88519 -13.79890 -13.48894 -13.22241 -13.04638 -13.01912 -12.75640 -12.53868 -12.29340 -12.15948 -11.78001 -11.64661 -11.14531 -10.84934 -10.17539 -9.74345 -8.45466 -6.14212 1.31682 1.43259 1.48562 1.52749 1.58596 1.63236 1.82096 1.88332 2.28064 2.44527 2.83039 2.86089 3.28384 3.47561 3.59428 3.72915 3.86490 4.12707 4.23416 4.46110 4.57960 4.82446 4.88914 5.06083 5.48317 5.66444 6.04053 6.32059 6.54457 6.60180 6.95543 7.04501 7.22209 7.78856 8.57357 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030816 B = 0.006939 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.409500 B = 4033.994963 C = 4586.019235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.221 3.779 3 C 0.175 3.825 4 N -0.437 5.437 5 C -0.348 4.348 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.866 5.866 9 Si 0.963 3.037 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.265 1.265 13 C 0.450 3.550 14 O -0.600 6.600 15 C 0.122 3.878 16 H 0.145 0.855 17 C -0.164 4.164 18 C 0.063 3.937 19 O -0.354 6.354 20 C 0.665 3.335 21 O -0.584 6.584 22 N -0.699 5.699 23 H 0.152 0.848 24 H 0.148 0.852 25 H 0.282 0.718 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.118 0.882 30 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 6.324 7.291 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.096 4.096 3 C 0.049 3.951 4 N -0.157 5.157 5 C -0.475 4.475 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.503 5.503 9 Si 0.787 3.213 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.189 1.189 13 C 0.238 3.762 14 O -0.484 6.484 15 C 0.014 3.986 16 H 0.162 0.838 17 C -0.202 4.202 18 C -0.010 4.010 19 O -0.266 6.266 20 C 0.419 3.581 21 O -0.473 6.473 22 N -0.365 5.365 23 H 0.169 0.831 24 H 0.164 0.836 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.136 0.864 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.803 5.578 7.613 10.590 hybrid contribution 0.653 -0.345 -1.715 1.867 sum -4.150 5.233 5.899 8.911 Atomic orbital electron populations 1.81103 1.13932 1.09321 1.10947 1.30345 0.96033 0.91953 0.91317 1.19711 0.79096 0.89867 1.06413 1.43414 1.55005 1.12059 1.05185 1.19306 1.49053 0.97213 0.81948 0.91472 1.25749 0.93744 0.95950 1.02854 1.69768 1.31989 1.10915 1.37631 0.85381 0.78599 0.78335 0.78957 1.20208 1.20413 1.18909 1.21049 0.81018 0.86054 0.88061 1.90592 1.50471 1.24656 1.82676 1.21325 0.92844 0.96179 0.88248 0.83835 1.22545 0.93864 1.05493 0.98316 1.23932 0.98615 0.87811 0.90611 1.86662 1.27289 1.51664 1.60942 1.17753 0.80969 0.79005 0.80409 1.90974 1.49674 1.43432 1.63204 1.45092 1.21267 1.50015 1.20130 0.83106 0.83571 0.90748 0.86677 0.91281 0.83375 0.86410 0.74059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.27 18.54 20.01 0.37 -15.90 16 2 C 0.22 6.99 13.51 89.44 1.21 8.20 16 3 C 0.18 5.35 5.18 84.57 0.44 5.79 16 4 N -0.44 -17.65 2.52 -645.41 -1.63 -19.28 16 5 C -0.35 -16.79 8.92 84.04 0.75 -16.04 16 6 H 0.07 3.63 7.71 -2.91 -0.02 3.61 16 7 C 0.02 1.01 4.98 84.93 0.42 1.43 16 8 N -0.87 -37.78 11.29 21.66 0.24 -37.54 16 9 Si 0.96 37.68 29.62 68.60 2.03 39.71 16 10 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 13 C 0.45 17.79 6.79 87.66 0.60 18.39 16 14 O -0.60 -29.85 16.22 -3.06 -0.05 -29.90 16 15 C 0.12 3.33 2.77 44.37 0.12 3.46 16 16 H 0.14 2.69 6.29 -2.39 -0.02 2.68 16 17 C -0.16 -3.75 5.42 30.78 0.17 -3.59 16 18 C 0.06 1.09 7.20 72.13 0.52 1.61 16 19 O -0.35 -9.95 10.50 -51.16 -0.54 -10.48 16 20 C 0.67 22.29 8.55 129.95 1.11 23.40 16 21 O -0.58 -24.07 17.95 19.93 0.36 -23.71 16 22 N -0.70 -21.52 4.85 -577.03 -2.80 -24.32 16 23 H 0.15 2.96 5.73 -2.39 -0.01 2.94 16 24 H 0.15 5.00 5.34 -2.38 -0.01 4.99 16 25 H 0.28 11.52 8.31 -92.71 -0.77 10.75 16 26 H 0.12 2.37 5.51 -2.39 -0.01 2.35 16 27 H 0.07 1.96 8.10 -2.38 -0.02 1.94 16 28 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.42 13.68 8.52 -92.71 -0.79 12.89 16 Total: -1.00 -67.33 267.90 3.75 -63.58 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.43 Total: 15.19 kcal Atomic # 6 Polarization: 37.31 SS G_CDS: 5.33 Total: 42.64 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -3.81 Total: -97.03 kcal Atomic # 8 Polarization: -63.87 SS G_CDS: -0.23 Total: -64.09 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -67.33 3.75 -63.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348134167.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.263 kcal (2) G-P(sol) polarization free energy of solvation -67.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds