Wall clock time and date at job start Sun Mar 29 2020 23:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46821 * 75.57508 * 3 2 1 5 5 C 1.37097 * 120.00008 * 270.42955 * 4 3 2 6 6 H 1.08000 * 120.00225 * 189.20331 * 5 4 3 7 7 C 1.38949 * 120.00001 * 9.20378 * 5 4 3 8 8 N 1.31417 * 119.99852 * 24.71834 * 7 5 4 9 9 Si 1.86801 * 120.00067 * 204.71704 * 7 5 4 10 10 H 1.48494 * 109.46997 * 60.00444 * 9 7 5 11 11 H 1.48503 * 109.47012 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47144 * 299.99946 * 9 7 5 13 13 C 1.34767 * 119.99651 * 90.43544 * 4 3 2 14 14 O 1.21296 * 119.99912 * 179.97438 * 13 4 3 15 15 C 1.50695 * 120.00615 * 359.97438 * 13 4 3 16 16 H 1.09000 * 109.32431 * 39.77198 * 15 13 4 17 17 C 1.53140 * 109.39795 * 280.00338 * 15 13 4 18 18 C 1.53483 * 108.36250 * 191.88513 * 17 15 13 19 19 O 1.45432 * 108.15103 * 61.70468 * 18 17 15 20 20 C 1.34230 * 117.16694 * 313.64206 * 19 18 17 21 21 O 1.21510 * 118.43836 * 196.74547 * 20 19 18 22 22 N 1.33730 * 123.09987 * 16.68973 * 20 19 18 23 23 H 1.08996 * 109.47058 * 315.57777 * 3 2 1 24 24 H 1.08989 * 109.46940 * 195.57587 * 3 2 1 25 25 H 0.97005 * 119.99688 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.68472 * 72.16419 * 17 15 13 27 27 H 1.09004 * 109.68188 * 311.60222 * 17 15 13 28 28 H 1.09003 * 109.73077 * 181.38428 * 18 17 15 29 29 H 1.09001 * 109.73562 * 302.02439 * 18 17 15 30 30 H 0.96994 * 118.51988 * 177.74621 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0965 -0.3432 -1.3378 5 6 3.3172 -1.6547 -1.6708 6 1 3.8147 -1.9002 -2.5974 7 6 2.9006 -2.6680 -0.8162 8 7 1.9119 -2.4550 0.0229 9 14 3.7460 -4.3332 -0.8601 10 1 5.1867 -4.1654 -0.5421 11 1 3.1191 -5.2332 0.1412 12 1 3.6036 -4.9251 -2.2145 13 6 3.3290 0.6297 -2.2409 14 8 3.7338 0.3451 -3.3483 15 6 3.0860 2.0712 -1.8750 16 1 3.4171 2.2442 -0.8510 17 6 1.5898 2.3785 -1.9844 18 6 1.4014 3.8996 -1.9032 19 8 2.0979 4.5031 -3.0282 20 6 3.3445 4.0733 -3.2793 21 8 4.0575 4.7510 -3.9926 22 7 3.8389 2.9352 -2.7807 23 1 2.9717 -0.7331 0.7193 24 1 2.9709 0.9907 0.2759 25 1 1.6209 -3.1625 0.6192 26 1 1.0554 1.8980 -1.1649 27 1 1.2084 2.0116 -2.9374 28 1 0.3399 4.1422 -1.9543 29 1 1.8195 4.2729 -0.9683 30 1 4.7378 2.6714 -3.0320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348134170.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:24 Heat of formation + Delta-G solvation = -62.781124 kcal Electronic energy + Delta-G solvation = -19070.581482 eV Core-core repulsion = 15867.319590 eV Total energy + Delta-G solvation = -3203.261892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95185 -39.06832 -36.94498 -36.18939 -35.16800 -34.41574 -32.22278 -31.29080 -27.89957 -27.19252 -24.76206 -23.79096 -20.26979 -19.79940 -18.27798 -18.14690 -17.22524 -16.97807 -16.51787 -15.80878 -14.95537 -14.79011 -14.49845 -14.26421 -14.12654 -13.47688 -13.30187 -13.24445 -12.35478 -12.08189 -11.87117 -11.76816 -11.61353 -11.42810 -11.25826 -10.77210 -10.61628 -10.57881 -10.50667 -10.28535 -9.47793 -9.41061 -8.64772 -8.35945 -6.75366 -4.18672 2.74976 2.90539 2.95893 3.11022 3.13409 3.26380 3.43698 3.67433 3.75317 3.92320 4.32639 4.54423 4.64349 4.75211 4.84717 5.00133 5.09182 5.24996 5.31460 5.49558 5.78309 5.96455 6.08165 6.30312 6.98965 7.25994 7.55797 7.79523 8.02396 8.30114 8.50564 8.74309 8.93318 9.42147 10.29393 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.032291 B = 0.007092 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.900850 B = 3946.951690 C = 4637.509681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.246 3.754 3 C 0.212 3.788 4 N -0.430 5.430 5 C -0.319 4.319 6 H 0.114 0.886 7 C 0.037 3.963 8 N -0.871 5.871 9 Si 0.930 3.070 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.436 3.564 14 O -0.560 6.560 15 C 0.120 3.880 16 H 0.096 0.904 17 C -0.169 4.169 18 C 0.064 3.936 19 O -0.345 6.345 20 C 0.662 3.338 21 O -0.543 6.543 22 N -0.703 5.703 23 H 0.133 0.867 24 H 0.086 0.914 25 H 0.278 0.722 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 6.215 5.264 8.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.072 4.072 3 C 0.085 3.915 4 N -0.149 5.149 5 C -0.446 4.446 6 H 0.132 0.868 7 C -0.168 4.168 8 N -0.510 5.510 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.223 3.777 14 O -0.442 6.442 15 C 0.011 3.989 16 H 0.113 0.887 17 C -0.208 4.208 18 C -0.010 4.010 19 O -0.257 6.257 20 C 0.414 3.586 21 O -0.430 6.430 22 N -0.370 5.370 23 H 0.151 0.849 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.124 0.876 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.325 6.535 4.454 7.915 hybrid contribution 0.828 -1.498 0.281 1.735 sum 0.503 5.037 4.735 6.931 Atomic orbital electron populations 1.80957 1.13306 1.12260 1.08051 1.29115 0.95233 0.90004 0.92864 1.18976 0.82009 1.01597 0.88937 1.43709 1.55603 1.06628 1.09008 1.19768 1.37175 0.79360 1.08254 0.86815 1.25276 0.94771 1.00400 0.96361 1.69834 1.21772 1.35652 1.23695 0.85919 0.79635 0.80353 0.78517 1.19479 1.20852 1.19665 1.19837 0.86325 0.85851 0.85699 1.90611 1.50115 1.82545 1.20949 1.21070 0.92511 0.91116 0.94201 0.88672 1.22606 0.94992 0.96583 1.06610 1.23490 0.98339 0.91815 0.87362 1.86681 1.26648 1.62498 1.49874 1.17766 0.80413 0.80777 0.79616 1.91004 1.53596 1.56921 1.41439 1.45089 1.20150 1.21470 1.50295 0.84939 0.89640 0.91150 0.87610 0.88886 0.86523 0.90157 0.73753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.60 18.31 42.16 0.77 -8.83 16 2 C 0.25 4.65 10.88 -20.76 -0.23 4.42 16 3 C 0.21 3.57 4.90 -6.82 -0.03 3.53 16 4 N -0.43 -8.82 2.58 -117.94 -0.30 -9.12 16 5 C -0.32 -7.51 9.42 -14.93 -0.14 -7.65 16 6 H 0.11 2.88 7.31 -52.49 -0.38 2.50 16 7 C 0.04 0.82 4.90 -17.47 -0.09 0.74 16 8 N -0.87 -19.83 9.13 55.50 0.51 -19.32 16 9 Si 0.93 18.22 29.62 -169.99 -5.03 13.18 16 10 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 13 C 0.44 8.70 6.78 -10.99 -0.07 8.63 16 14 O -0.56 -13.47 16.00 5.54 0.09 -13.38 16 15 C 0.12 1.80 2.81 -69.25 -0.19 1.61 16 16 H 0.10 1.10 6.29 -51.93 -0.33 0.77 16 17 C -0.17 -2.37 5.36 -26.41 -0.14 -2.51 16 18 C 0.06 0.74 7.20 37.41 0.27 1.01 16 19 O -0.35 -5.41 10.50 -39.33 -0.41 -5.83 16 20 C 0.66 11.57 8.55 53.59 0.46 12.03 16 21 O -0.54 -11.23 17.95 -19.41 -0.35 -11.58 16 22 N -0.70 -11.20 4.85 -60.47 -0.29 -11.49 16 23 H 0.13 2.32 6.38 -51.93 -0.33 1.99 16 24 H 0.09 1.00 5.92 -51.94 -0.31 0.70 16 25 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 26 H 0.11 1.48 4.96 -51.93 -0.26 1.22 16 27 H 0.09 1.52 8.10 -51.93 -0.42 1.09 16 28 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.42 6.73 8.52 -40.82 -0.35 6.38 16 LS Contribution 263.14 15.07 3.97 3.97 Total: -1.00 -30.64 263.14 -3.58 -34.23 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.35 Total: 6.37 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: -0.17 Total: 21.80 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.68 Total: -48.76 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.67 Total: -30.79 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.64 -3.58 -34.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348134170.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.555 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds