Wall clock time and date at job start Sun Mar 29 2020 23:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48505 * 109.47091 * 239.99873 * 3 2 1 5 5 H 1.48503 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47397 * 119.99916 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 16 15 13 18 18 O 1.20823 * 119.99984 * 359.97438 * 17 16 15 19 19 O 1.34227 * 120.00131 * 179.97438 * 17 16 15 20 20 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 21 21 N 1.30903 * 108.38945 * 359.60960 * 20 11 10 22 22 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 23 23 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 24 24 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 25 25 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 26 26 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 27 27 H 1.08995 * 109.46638 * 300.00002 * 16 15 13 28 28 H 1.08998 * 109.46846 * 59.99549 * 16 15 13 29 29 H 0.96694 * 117.00295 * 179.97438 * 19 17 16 30 30 H 1.07999 * 125.80209 * 179.74829 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2819 2.7464 -0.0006 6 1 3.1007 1.6964 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 6 -1.3581 -8.8610 -0.0124 17 6 -1.2174 -10.3614 -0.0179 18 8 -0.1193 -10.8652 -0.0173 19 8 -2.3121 -11.1381 -0.0234 20 6 -0.3513 -3.8198 -0.0064 21 7 -0.0716 -2.5410 -0.0010 22 1 -0.4851 0.8401 -0.0004 23 1 2.9300 -3.8708 0.0032 24 1 1.8707 -6.3427 0.0017 25 1 0.5782 -8.5285 -0.8961 26 1 0.5737 -8.5362 0.8839 27 1 -1.9058 -8.5510 0.8775 28 1 -1.9014 -8.5433 -0.9024 29 1 -2.1716 -12.0948 -0.0272 30 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610841.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:26 Heat of formation + Delta-G solvation = -50.780310 kcal Electronic energy + Delta-G solvation = -17563.644135 eV Core-core repulsion = 14360.902637 eV Total energy + Delta-G solvation = -3202.741498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51284 -39.85551 -38.60359 -36.38266 -34.26526 -33.21488 -32.92152 -30.23277 -28.08913 -26.20519 -24.60435 -21.73142 -20.88758 -19.93088 -19.41462 -18.37943 -17.59408 -16.89980 -16.48005 -15.76758 -15.39446 -15.18322 -15.04665 -14.05983 -13.55349 -13.49498 -13.15004 -12.88200 -12.78505 -12.12814 -11.75884 -11.66912 -11.41759 -11.36278 -11.22217 -10.96164 -10.77852 -10.55751 -10.15986 -9.21927 -9.16008 -8.80450 -8.05842 -6.70099 -6.55286 -4.22591 2.01107 2.76818 2.81600 3.04014 3.05158 3.09082 3.67822 3.68831 3.91598 4.41996 4.52919 4.77141 4.94492 5.02652 5.14000 5.29986 5.51504 5.67687 5.78581 6.24880 6.28077 6.45941 6.90245 6.95706 7.12026 7.24463 7.67591 7.85971 8.17017 8.28921 8.62848 8.84409 9.38133 9.67331 10.40696 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.086221 B = 0.003573 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.668448 B = 7834.539264 C = 8138.744536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.084 4.084 11 C -0.062 4.062 12 N -0.623 5.623 13 C 0.498 3.502 14 O -0.539 6.539 15 C -0.126 4.126 16 C -0.098 4.098 17 C 0.481 3.519 18 O -0.521 6.521 19 O -0.517 6.517 20 C -0.033 4.033 21 N -0.261 5.261 22 H 0.275 0.725 23 H 0.146 0.854 24 H 0.398 0.602 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.408 0.592 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -14.631 -0.030 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.168 4.168 12 N -0.265 5.265 13 C 0.285 3.715 14 O -0.417 6.417 15 C -0.166 4.166 16 C -0.136 4.136 17 C 0.324 3.676 18 O -0.410 6.410 19 O -0.328 6.328 20 C -0.209 4.209 21 N -0.092 5.092 22 H 0.086 0.914 23 H 0.163 0.837 24 H 0.231 0.769 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.267 0.733 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.367 -12.624 -0.027 12.630 hybrid contribution 1.460 -1.065 0.000 1.807 sum 1.093 -13.689 -0.027 13.733 Atomic orbital electron populations 1.70208 1.06123 1.28087 1.35271 1.25637 0.95707 1.00256 0.95489 0.85895 0.79140 0.79642 0.79461 1.19172 1.20134 1.19168 1.19825 0.91642 0.80585 1.53571 0.86672 1.44545 1.04053 1.03299 1.39144 1.21273 0.96863 0.85392 1.19943 1.17293 0.94318 0.81330 1.23815 1.42496 1.08310 1.04569 1.71093 1.20200 0.84610 0.88327 0.78411 1.90610 1.25737 1.75116 1.50252 1.21372 0.97230 0.92305 1.05688 1.21042 0.99438 0.85368 1.07718 1.23640 0.81521 0.91263 0.71139 1.90721 1.27894 1.76251 1.46112 1.84561 1.38531 1.24169 1.85573 1.24116 0.98044 0.90731 1.07984 1.78251 0.90121 1.15116 1.25718 0.91410 0.83700 0.76859 0.88282 0.88293 0.86595 0.86586 0.73298 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.55 11.81 55.49 0.66 -20.89 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.90 29.55 -169.99 -5.02 13.87 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.32 -8.58 10.25 -14.82 -0.15 -8.73 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 10 C -0.08 -1.97 11.49 -16.39 -0.19 -2.16 16 11 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 12 N -0.62 -10.71 5.47 -10.00 -0.05 -10.77 16 13 C 0.50 8.11 7.80 -10.98 -0.09 8.02 16 14 O -0.54 -10.78 13.14 5.54 0.07 -10.71 16 15 C -0.13 -1.41 4.99 -27.88 -0.14 -1.55 16 16 C -0.10 -1.01 5.10 -27.88 -0.14 -1.16 16 17 C 0.48 4.87 8.33 36.01 0.30 5.17 16 18 O -0.52 -6.58 16.74 -18.75 -0.31 -6.90 16 19 O -0.52 -4.10 13.42 -39.25 -0.53 -4.62 16 20 C -0.03 -0.87 10.85 -17.04 -0.18 -1.06 16 21 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16 22 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 24 H 0.40 5.25 8.83 -40.82 -0.36 4.89 16 25 H 0.10 1.00 8.10 -51.92 -0.42 0.58 16 26 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 27 H 0.12 1.19 8.10 -51.93 -0.42 0.77 16 28 H 0.12 1.19 8.10 -51.93 -0.42 0.77 16 29 H 0.41 1.45 9.10 45.56 0.41 1.87 16 30 H 0.18 4.51 5.92 -52.49 -0.31 4.20 16 LS Contribution 277.23 15.07 4.18 4.18 Total: -1.00 -35.27 277.23 -3.91 -39.18 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -1.91 Total: 10.27 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.27 Total: -2.36 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.88 Total: -42.90 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.77 Total: -22.23 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -35.27 -3.91 -39.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610841.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.604 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds