Wall clock time and date at job start Sun Mar 29 2020 23:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38221 * 120.01673 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.97284 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46950 * 340.01872 * 5 4 3 7 7 N 1.46502 * 109.46934 * 220.02224 * 5 4 3 8 8 C 1.36938 * 120.00336 * 155.00133 * 7 5 4 9 9 H 1.08006 * 119.99571 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00506 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99746 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00342 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46853 * 60.00282 * 12 10 8 14 14 H 1.48490 * 109.47138 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47007 * 300.00561 * 12 10 8 16 16 C 1.50702 * 109.47220 * 100.02327 * 5 4 3 17 17 O 1.20823 * 120.00087 * 119.99557 * 16 5 4 18 18 O 1.34223 * 119.99646 * 299.99561 * 16 5 4 19 19 C 1.38265 * 120.04896 * 359.97438 * 4 3 2 20 20 C 1.38168 * 120.03012 * 0.02562 * 19 4 3 21 21 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 22 22 F 1.35102 * 120.02757 * 0.24616 * 21 2 1 23 23 H 1.09001 * 109.46710 * 269.95570 * 1 2 3 24 24 H 1.09004 * 109.46977 * 29.95209 * 1 2 3 25 25 H 1.08998 * 109.47601 * 149.95799 * 1 2 3 26 26 H 1.08001 * 119.98751 * 0.02562 * 3 2 1 27 27 H 0.96999 * 119.99836 * 334.99840 * 7 5 4 28 28 H 0.97003 * 119.99656 * 179.97438 * 11 10 8 29 29 H 0.96704 * 117.00297 * 179.97438 * 18 16 5 30 30 H 1.08002 * 119.98387 * 179.97438 * 19 4 3 31 31 H 1.08001 * 120.02005 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5027 -0.0011 6 1 3.6778 3.2997 -0.3522 7 7 5.4932 2.3972 -0.8898 8 6 6.0245 3.5238 -1.4588 9 1 5.5881 4.4900 -1.2528 10 6 7.1238 3.4240 -2.3004 11 7 7.6552 2.2465 -2.5519 12 14 7.8480 4.9607 -3.0772 13 1 8.2967 5.8904 -2.0098 14 1 9.0065 4.5866 -3.9275 15 1 6.8162 5.6267 -3.9122 16 6 4.7989 2.8147 1.3978 17 8 5.9786 2.9365 1.6287 18 8 3.9031 2.9573 2.3871 19 6 4.2732 0.0004 -0.0005 20 6 3.5842 -1.1973 -0.0005 21 6 2.1994 -1.1988 -0.0005 22 9 1.5247 -2.3693 -0.0061 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3633 0.8905 -0.5131 25 1 -0.3634 -0.8896 -0.5145 26 1 1.6585 2.1322 0.0004 27 1 5.8849 1.5294 -1.0751 28 1 8.4232 2.1767 -3.1404 29 1 4.2495 3.1568 3.2677 30 1 5.3532 0.0018 -0.0014 31 1 4.1254 -2.1319 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600146431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:57 Heat of formation + Delta-G solvation = -101.800153 kcal Electronic energy + Delta-G solvation = -18303.770064 eV Core-core repulsion = 15078.896217 eV Total energy + Delta-G solvation = -3224.873846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.74594 -39.83789 -38.67227 -35.61079 -34.74402 -32.76935 -31.91458 -29.84455 -26.94800 -26.38114 -23.59415 -22.44388 -21.66591 -19.78852 -17.75214 -17.36193 -17.21272 -16.28000 -15.85069 -15.53800 -15.35603 -14.73185 -14.22455 -13.94584 -13.50086 -13.29400 -13.11344 -13.03896 -12.84623 -12.52358 -11.98236 -11.62696 -11.36366 -10.97691 -10.92144 -10.80771 -10.69680 -10.24448 -9.99460 -9.91210 -9.14275 -8.71120 -8.26889 -7.30087 -5.94904 -3.26112 1.30539 1.42867 3.02560 3.36102 3.42449 3.43426 3.63284 3.89844 4.42021 4.48103 4.81042 4.88554 5.03693 5.35095 5.41197 5.47162 5.58326 5.63003 5.72882 5.80909 5.96702 6.12089 6.18380 6.26051 6.38171 6.48110 6.78820 7.07769 7.18057 7.53257 8.18431 8.69606 9.32546 9.75800 10.11775 11.26229 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.006156 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.791640 B = 4547.192455 C = 5008.730236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.123 4.123 3 C -0.073 4.073 4 C -0.076 4.076 5 C 0.227 3.773 6 H 0.099 0.901 7 N -0.679 5.679 8 C -0.256 4.256 9 H 0.075 0.925 10 C 0.002 3.998 11 N -0.922 5.922 12 Si 0.915 3.085 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.282 1.282 16 C 0.434 3.566 17 O -0.496 6.496 18 O -0.533 6.533 19 C -0.079 4.079 20 C -0.148 4.148 21 C 0.087 3.913 22 F -0.144 7.144 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.135 0.865 27 H 0.393 0.607 28 H 0.261 0.739 29 H 0.387 0.613 30 H 0.137 0.863 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 -4.189 6.228 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.077 4.077 5 C 0.111 3.889 6 H 0.116 0.884 7 N -0.317 5.317 8 C -0.386 4.386 9 H 0.093 0.907 10 C -0.196 4.196 11 N -0.567 5.567 12 Si 0.745 3.255 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.208 1.208 16 C 0.270 3.730 17 O -0.381 6.381 18 O -0.344 6.344 19 C -0.097 4.097 20 C -0.167 4.167 21 C 0.068 3.932 22 F -0.123 7.123 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.229 0.771 28 H 0.071 0.929 29 H 0.244 0.756 30 H 0.155 0.845 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.525 -4.132 5.760 14.392 hybrid contribution 0.983 0.449 0.239 1.106 sum -11.543 -3.683 5.999 13.520 Atomic orbital electron populations 1.20679 0.90380 1.03090 1.02501 1.19811 0.96733 0.91816 1.04057 1.20732 0.92962 0.97166 0.98330 1.19857 0.93538 0.94612 0.99701 1.18794 0.91153 0.94191 0.84744 0.88379 1.42451 1.31988 1.08774 1.48537 1.19163 1.10398 0.87097 1.21926 0.90714 1.24811 0.97779 0.97144 0.99870 1.69651 1.25076 1.22197 1.39810 0.86160 0.78549 0.81962 0.78840 1.20903 1.21417 1.20836 1.26789 0.85042 0.72511 0.88651 1.90669 1.19053 1.45301 1.83036 1.84715 1.44726 1.83747 1.21178 1.20958 1.00930 0.90880 0.96965 1.21059 0.92069 0.99636 1.03893 1.17520 0.90021 0.80735 1.04971 1.91441 1.80480 1.46237 1.94149 0.91077 0.90965 0.91506 0.84761 0.77067 0.92938 0.75645 0.84549 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.84 36.00 0.35 -0.79 16 2 C -0.12 -1.67 5.89 -104.56 -0.62 -2.29 16 3 C -0.07 -1.05 9.32 -39.59 -0.37 -1.42 16 4 C -0.08 -1.29 4.88 -104.62 -0.51 -1.80 16 5 C 0.23 4.47 3.00 -70.23 -0.21 4.26 16 6 H 0.10 1.80 7.94 -51.93 -0.41 1.39 16 7 N -0.68 -16.65 4.59 -55.68 -0.26 -16.91 16 8 C -0.26 -6.95 9.81 -15.06 -0.15 -7.10 16 9 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 10 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 11 N -0.92 -27.12 13.06 55.49 0.72 -26.40 16 12 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.43 8.62 7.64 36.01 0.28 8.90 16 17 O -0.50 -11.96 17.10 -18.75 -0.32 -12.28 16 18 O -0.53 -8.25 13.34 -39.24 -0.52 -8.77 16 19 C -0.08 -1.33 9.05 -39.60 -0.36 -1.69 16 20 C -0.15 -2.21 10.03 -39.52 -0.40 -2.60 16 21 C 0.09 1.26 7.24 -39.42 -0.29 0.98 16 22 F -0.14 -2.05 16.48 2.25 0.04 -2.01 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.07 0.67 7.64 -51.93 -0.40 0.28 16 26 H 0.13 1.62 8.04 -52.49 -0.42 1.20 16 27 H 0.39 10.10 6.06 -40.82 -0.25 9.85 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.39 4.41 9.10 45.56 0.41 4.83 16 30 H 0.14 2.46 6.91 -52.49 -0.36 2.10 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 283.75 15.07 4.28 4.28 Total: -1.00 -32.12 283.75 -5.68 -37.80 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -2.24 Total: 10.91 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.36 Total: -3.59 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.47 Total: -43.31 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.84 Total: -21.04 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.12 -5.68 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600146431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.997 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds