Wall clock time and date at job start Sun Mar 29 2020 23:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38221 * 120.01673 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.97284 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46950 * 340.01872 * 5 4 3 7 7 N 1.46502 * 109.46934 * 220.02224 * 5 4 3 8 8 C 1.36938 * 120.00336 * 155.00133 * 7 5 4 9 9 H 1.08006 * 119.99571 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00506 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99746 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00342 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46853 * 60.00282 * 12 10 8 14 14 H 1.48490 * 109.47138 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47007 * 300.00561 * 12 10 8 16 16 C 1.50702 * 109.47220 * 100.02327 * 5 4 3 17 17 O 1.20823 * 120.00087 * 119.99557 * 16 5 4 18 18 O 1.34223 * 119.99646 * 299.99561 * 16 5 4 19 19 C 1.38265 * 120.04896 * 359.97438 * 4 3 2 20 20 C 1.38168 * 120.03012 * 0.02562 * 19 4 3 21 21 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 22 22 F 1.35102 * 120.02757 * 0.24616 * 21 2 1 23 23 H 1.09001 * 109.46710 * 269.95570 * 1 2 3 24 24 H 1.09004 * 109.46977 * 29.95209 * 1 2 3 25 25 H 1.08998 * 109.47601 * 149.95799 * 1 2 3 26 26 H 1.08001 * 119.98751 * 0.02562 * 3 2 1 27 27 H 0.96999 * 119.99836 * 334.99840 * 7 5 4 28 28 H 0.97003 * 119.99656 * 179.97438 * 11 10 8 29 29 H 0.96704 * 117.00297 * 179.97438 * 18 16 5 30 30 H 1.08002 * 119.98387 * 179.97438 * 19 4 3 31 31 H 1.08001 * 120.02005 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5027 -0.0011 6 1 3.6778 3.2997 -0.3522 7 7 5.4932 2.3972 -0.8898 8 6 6.0245 3.5238 -1.4588 9 1 5.5881 4.4900 -1.2528 10 6 7.1238 3.4240 -2.3004 11 7 7.6552 2.2465 -2.5519 12 14 7.8480 4.9607 -3.0772 13 1 8.2967 5.8904 -2.0098 14 1 9.0065 4.5866 -3.9275 15 1 6.8162 5.6267 -3.9122 16 6 4.7989 2.8147 1.3978 17 8 5.9786 2.9365 1.6287 18 8 3.9031 2.9573 2.3871 19 6 4.2732 0.0004 -0.0005 20 6 3.5842 -1.1973 -0.0005 21 6 2.1994 -1.1988 -0.0005 22 9 1.5247 -2.3693 -0.0061 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3633 0.8905 -0.5131 25 1 -0.3634 -0.8896 -0.5145 26 1 1.6585 2.1322 0.0004 27 1 5.8849 1.5294 -1.0751 28 1 8.4232 2.1767 -3.1404 29 1 4.2495 3.1568 3.2677 30 1 5.3532 0.0018 -0.0014 31 1 4.1254 -2.1319 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600146431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:57 Heat of formation + Delta-G solvation = -123.054786 kcal Electronic energy + Delta-G solvation = -18304.691734 eV Core-core repulsion = 15078.896217 eV Total energy + Delta-G solvation = -3225.795516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.88705 -41.33122 -39.99368 -37.16251 -36.42125 -34.22424 -33.35491 -31.44206 -28.22301 -27.74093 -25.49640 -23.67277 -22.99763 -21.20424 -19.57117 -18.86004 -18.48516 -17.60704 -17.36607 -16.94461 -16.63921 -16.48411 -15.75947 -15.32991 -15.16778 -14.43871 -14.32727 -14.24739 -14.12848 -13.83226 -13.13796 -13.03114 -12.83868 -12.77701 -12.48950 -12.30615 -12.21982 -11.94692 -11.83171 -11.68706 -11.04324 -9.85825 -9.50180 -9.27062 -8.02595 -5.35084 0.08397 0.26662 1.43040 1.46830 1.50531 1.56218 2.23662 2.48069 2.67335 3.26098 3.38421 3.65535 3.70401 3.85009 3.87221 4.26011 4.33411 4.49239 4.64310 4.74102 4.84674 4.86272 5.03397 5.19389 5.24545 5.34321 5.41351 5.53900 5.77073 5.92640 6.14792 7.21930 7.24035 7.84601 8.10247 9.19676 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.006156 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.791640 B = 4547.192455 C = 5008.730236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.067 4.067 4 C -0.090 4.090 5 C 0.224 3.776 6 H 0.116 0.884 7 N -0.698 5.698 8 C -0.255 4.255 9 H 0.081 0.919 10 C -0.063 4.063 11 N -0.962 5.962 12 Si 0.977 3.023 13 H -0.283 1.283 14 H -0.293 1.293 15 H -0.268 1.268 16 C 0.448 3.552 17 O -0.545 6.545 18 O -0.512 6.512 19 C -0.097 4.097 20 C -0.149 4.149 21 C 0.083 3.917 22 F -0.141 7.141 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.163 0.837 27 H 0.382 0.618 28 H 0.255 0.745 29 H 0.412 0.588 30 H 0.113 0.887 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.414 -3.569 6.868 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.091 4.091 5 C 0.110 3.890 6 H 0.133 0.867 7 N -0.337 5.337 8 C -0.386 4.386 9 H 0.099 0.901 10 C -0.256 4.256 11 N -0.610 5.610 12 Si 0.805 3.195 13 H -0.209 1.209 14 H -0.219 1.219 15 H -0.193 1.193 16 C 0.287 3.713 17 O -0.434 6.434 18 O -0.324 6.324 19 C -0.116 4.116 20 C -0.168 4.168 21 C 0.063 3.937 22 F -0.119 7.119 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.180 0.820 27 H 0.216 0.784 28 H 0.064 0.936 29 H 0.272 0.728 30 H 0.131 0.869 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.217 -3.497 6.456 16.896 hybrid contribution 1.594 0.191 0.215 1.620 sum -13.623 -3.306 6.671 15.525 Atomic orbital electron populations 1.20792 0.87660 1.04271 1.03892 1.20182 0.98615 0.90881 1.01975 1.20978 0.91678 0.98755 0.97142 1.19722 0.94604 0.93059 1.01739 1.18971 0.89854 0.96382 0.83790 0.86656 1.42513 1.33382 1.07560 1.50222 1.19548 1.10004 0.88091 1.20953 0.90091 1.25629 0.98803 0.99829 1.01323 1.69806 1.25790 1.24128 1.41305 0.85173 0.77779 0.78640 0.77889 1.20921 1.21946 1.19309 1.26239 0.84350 0.71302 0.89433 1.90668 1.21065 1.47704 1.83943 1.84589 1.42961 1.82801 1.22001 1.20829 1.00017 0.91987 0.98766 1.21160 0.92672 0.99509 1.03431 1.17659 0.89885 0.81375 1.04736 1.91453 1.80274 1.46142 1.94081 0.89419 0.89022 0.91190 0.81970 0.78352 0.93620 0.72802 0.86896 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.84 71.23 0.70 -1.12 16 2 C -0.12 -2.77 5.89 -19.82 -0.12 -2.89 16 3 C -0.07 -1.73 9.32 22.26 0.21 -1.53 16 4 C -0.09 -2.97 4.88 -19.86 -0.10 -3.07 16 5 C 0.22 8.66 3.00 43.50 0.13 8.79 16 6 H 0.12 4.03 7.94 -2.39 -0.02 4.01 16 7 N -0.70 -34.92 4.59 -330.09 -1.52 -36.44 16 8 C -0.25 -14.01 9.81 84.03 0.82 -13.19 16 9 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 10 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 11 N -0.96 -58.50 13.06 21.65 0.28 -58.22 16 12 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 16 C 0.45 17.39 7.64 71.24 0.54 17.93 16 17 O -0.54 -26.45 17.10 21.97 0.38 -26.07 16 18 O -0.51 -14.44 13.34 -51.35 -0.69 -15.13 16 19 C -0.10 -3.33 9.05 22.26 0.20 -3.13 16 20 C -0.15 -4.35 10.03 22.31 0.22 -4.13 16 21 C 0.08 2.24 7.24 22.38 0.16 2.40 16 22 F -0.14 -3.68 16.48 44.97 0.74 -2.93 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.09 1.20 8.09 -2.38 -0.02 1.18 16 25 H 0.07 1.15 7.64 -2.39 -0.02 1.13 16 26 H 0.16 3.22 8.04 -2.91 -0.02 3.19 16 27 H 0.38 20.50 6.06 -92.71 -0.56 19.94 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.41 8.14 9.10 -74.05 -0.67 7.47 16 30 H 0.11 4.35 6.91 -2.91 -0.02 4.33 16 31 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -70.35 283.75 4.42 -65.93 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.05 Total: 28.08 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 3.25 Total: -3.03 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -1.23 Total: -94.66 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.31 Total: -41.20 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.74 Total: -2.93 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -70.35 4.42 -65.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600146431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.126 kcal (2) G-P(sol) polarization free energy of solvation -70.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds