Wall clock time and date at job start Sun Mar 29 2020 23:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47635 * 300.00262 * 3 2 1 6 6 H 1.48504 * 109.47046 * 60.00326 * 3 2 1 7 7 C 1.37875 * 120.00624 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00629 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47273 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47273 * 180.02562 * 10 9 7 12 12 O 1.21267 * 119.99535 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.97438 * 11 10 9 14 14 C 1.38475 * 119.99931 * 179.97438 * 13 11 10 15 15 N 1.36322 * 126.80419 * 359.41010 * 14 13 11 16 16 H 0.97007 * 126.16628 * 359.97438 * 15 14 13 17 17 C 1.36273 * 107.67098 * 179.87509 * 15 14 13 18 18 N 1.29949 * 109.50304 * 0.40516 * 17 15 14 19 19 C 1.36041 * 109.19871 * 359.74788 * 18 17 15 20 20 C 1.46494 * 126.37862 * 179.97438 * 19 18 17 21 21 O 1.21642 * 119.99679 * 180.02562 * 20 19 18 22 22 O 1.34878 * 120.00259 * 0.03106 * 20 19 18 23 23 H 0.96995 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46911 * 59.99765 * 9 7 2 25 25 H 1.09006 * 109.46769 * 300.00431 * 9 7 2 26 26 H 1.08995 * 109.47596 * 59.99876 * 10 9 7 27 27 H 1.09006 * 109.47322 * 299.99783 * 10 9 7 28 28 H 0.96996 * 119.99859 * 359.72574 * 13 11 10 29 29 H 1.08002 * 125.25365 * 180.13054 * 17 15 14 30 30 H 0.96701 * 117.00067 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2793 -4.9672 -0.0011 13 7 2.1660 -6.1343 -0.0018 14 6 1.4737 -7.3336 -0.0018 15 7 0.1201 -7.4952 0.0099 16 1 -0.5411 -6.7855 0.0203 17 6 -0.1368 -8.8335 0.0022 18 7 0.9844 -9.4904 -0.0049 19 6 2.0199 -8.6081 -0.0078 20 6 3.4462 -8.9423 -0.0150 21 8 4.2786 -8.0553 -0.0165 22 8 3.8364 -10.2334 -0.0202 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8894 27 1 2.8721 -3.6043 -0.8906 28 1 3.1359 -6.1342 -0.0059 29 1 -1.1204 -9.2795 0.0063 30 1 4.7881 -10.4044 -0.0253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:21 Heat of formation + Delta-G solvation = -83.462806 kcal Electronic energy + Delta-G solvation = -17825.605683 eV Core-core repulsion = 14621.446965 eV Total energy + Delta-G solvation = -3204.158718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.39506 -39.81034 -39.60577 -36.16141 -34.96660 -33.73395 -32.68025 -31.26651 -29.20229 -26.10171 -24.44950 -22.89869 -21.71536 -20.71591 -19.98002 -18.86218 -17.84566 -17.15653 -16.55635 -16.23537 -15.90995 -15.49997 -15.42030 -14.61724 -14.52280 -14.33381 -13.77118 -13.25804 -12.80803 -12.33389 -11.63176 -11.39341 -11.19804 -11.03953 -10.92789 -10.71234 -10.54107 -10.24207 -10.16312 -10.08305 -9.63046 -9.24192 -8.45691 -8.11474 -6.09140 -4.14146 1.11406 2.11452 2.30357 2.71152 3.02915 3.25841 3.26358 3.32710 3.34847 3.37955 4.32850 4.38046 4.75919 5.06907 5.26895 5.28296 5.47824 5.69215 5.93153 5.96353 6.30653 6.35997 6.60343 7.11702 7.27724 7.57307 7.57481 7.62790 7.89175 7.93046 7.97942 8.25960 8.93003 9.50772 11.01801 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.039898 B = 0.004220 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.621528 B = 6633.435563 C = 7314.600453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.515 3.485 12 O -0.522 6.522 13 N -0.642 5.642 14 C 0.341 3.659 15 N -0.560 5.560 16 H 0.442 0.558 17 C 0.187 3.813 18 N -0.430 5.430 19 C -0.112 4.112 20 C 0.581 3.419 21 O -0.534 6.534 22 O -0.498 6.498 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.438 0.562 29 H 0.222 0.778 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -17.169 0.012 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.306 3.694 12 O -0.396 6.396 13 N -0.294 5.294 14 C 0.119 3.881 15 N -0.177 5.177 16 H 0.290 0.710 17 C -0.099 4.099 18 N -0.148 5.148 19 C -0.240 4.240 20 C 0.427 3.573 21 O -0.425 6.425 22 O -0.307 6.307 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.281 0.719 29 H 0.238 0.762 30 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.532 -17.538 0.016 17.720 hybrid contribution 0.991 1.937 0.001 2.176 sum 3.524 -15.602 0.017 15.995 Atomic orbital electron populations 1.69987 1.06110 1.26724 1.49964 1.25013 0.94850 0.99378 0.95024 0.86496 0.80049 0.83542 0.77665 1.19635 1.20936 1.20942 1.21202 0.93108 0.90700 1.51811 0.92282 1.18959 0.93061 0.89297 0.98817 1.21991 1.01036 0.89888 1.03829 1.22303 0.88658 0.85659 0.72749 1.90477 1.14692 1.86837 1.47582 1.43663 1.12218 1.01856 1.71656 1.18282 0.83564 0.87620 0.98641 1.43814 1.05724 1.11303 1.56866 0.71036 1.25072 0.99799 0.78338 1.06718 1.70579 0.96769 1.31545 1.15919 1.18805 0.91453 0.87212 1.26540 1.18959 0.86821 0.80229 0.71267 1.90873 1.53408 1.48868 1.49333 1.84684 1.32629 1.27817 1.85612 0.92870 0.95602 0.95612 0.88905 0.88918 0.71913 0.76212 0.73224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.13 -2.35 5.64 -27.88 -0.16 -2.51 16 11 C 0.51 8.87 7.79 -10.98 -0.09 8.79 16 12 O -0.52 -10.17 13.57 5.57 0.08 -10.10 16 13 N -0.64 -9.34 5.36 -10.87 -0.06 -9.40 16 14 C 0.34 4.95 7.73 -152.24 -1.18 3.77 16 15 N -0.56 -7.12 5.75 -12.68 -0.07 -7.19 16 16 H 0.44 5.66 6.55 -40.82 -0.27 5.39 16 17 C 0.19 2.02 13.01 -89.70 -1.17 0.85 16 18 N -0.43 -5.86 11.31 -10.63 -0.12 -5.98 16 19 C -0.11 -1.62 7.07 -82.52 -0.58 -2.20 16 20 C 0.58 7.79 8.30 34.06 0.28 8.08 16 21 O -0.53 -7.66 15.93 -19.38 -0.31 -7.97 16 22 O -0.50 -5.31 13.44 -40.98 -0.55 -5.87 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.03 0.70 8.10 -51.93 -0.42 0.27 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.44 5.80 6.90 -40.82 -0.28 5.52 16 29 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.41 2.16 9.11 45.56 0.42 2.57 16 LS Contribution 277.03 15.07 4.17 4.17 Total: -1.00 -34.06 277.03 -6.35 -40.41 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -1.78 Total: 7.01 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -3.42 Total: 4.51 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.48 Total: -48.12 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.78 Total: -23.93 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.06 -6.35 -40.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.055 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds