Wall clock time and date at job start Sun Mar 29 2020 23:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.38473 * 119.82752 * 269.72436 * 12 11 10 14 14 C 1.37833 * 120.22928 * 179.76446 * 13 12 11 15 15 C 1.39724 * 119.87007 * 0.48806 * 14 13 12 16 16 C 1.47558 * 120.17390 * 179.74296 * 15 14 13 17 17 O 1.21484 * 120.00183 * 180.02562 * 16 15 14 18 18 O 1.34729 * 120.00075 * 0.02725 * 16 15 14 19 19 C 1.39881 * 119.65330 * 359.76671 * 15 14 13 20 20 F 1.35106 * 120.11171 * 179.97438 * 19 15 14 21 21 C 1.38209 * 119.82430 * 89.99956 * 12 11 10 22 22 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 24 24 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 25 25 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 26 26 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 27 27 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 28 28 H 1.08004 * 119.88217 * 0.02562 * 13 12 11 29 29 H 1.08000 * 120.06869 * 180.23541 * 14 13 12 30 30 H 0.96699 * 117.00431 * 180.02562 * 18 16 15 31 31 H 1.08006 * 119.93587 * 359.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9724 -6.5412 -1.2015 14 6 3.8992 -7.5614 -1.2106 15 6 4.3705 -8.0842 -0.0036 16 6 5.3585 -9.1802 -0.0055 17 8 5.7658 -9.6327 1.0458 18 8 5.8089 -9.6791 -1.1731 19 6 3.9004 -7.5635 1.2066 20 9 4.3495 -8.0624 2.3792 21 6 2.9740 -6.5365 1.1988 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8403 -3.5488 -0.7819 26 1 0.8798 -4.9817 0.8886 27 1 0.8805 -4.9812 -0.8914 28 1 2.6052 -6.1394 -2.1343 29 1 4.2575 -7.9587 -2.1488 30 1 6.4553 -10.3966 -1.1238 31 1 2.6093 -6.1324 2.1317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068311.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:31 Heat of formation + Delta-G solvation = -138.301599 kcal Electronic energy + Delta-G solvation = -17424.384241 eV Core-core repulsion = 14197.927574 eV Total energy + Delta-G solvation = -3226.456668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.06322 -41.37123 -39.99602 -37.13688 -37.01574 -34.72147 -32.78002 -31.69333 -29.24061 -26.81335 -24.34263 -23.87379 -23.29965 -22.04359 -19.23762 -18.87525 -18.43944 -17.76719 -17.42291 -17.12306 -16.71302 -16.31488 -16.20011 -15.59602 -15.30418 -15.01907 -14.76669 -14.27024 -14.12289 -13.46965 -13.34269 -13.07929 -12.94593 -12.68335 -12.60688 -12.54603 -12.31361 -11.99520 -11.68280 -11.30510 -10.65064 -10.18992 -9.88847 -9.13349 -8.21598 -6.31972 -0.58476 0.11011 1.37192 1.43405 1.44774 1.56274 1.91474 2.40465 2.49472 2.98512 3.12606 3.45945 3.61798 3.88654 3.95599 4.15151 4.22074 4.39504 4.62744 4.77547 4.91880 4.96650 5.04444 5.10491 5.28387 5.41790 5.49561 5.61639 5.67358 6.02184 6.41237 6.70203 6.89367 6.89832 7.38934 8.89663 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.039009 B = 0.003720 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.618645 B = 7524.545713 C = 7565.823452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.685 5.685 11 C 0.089 3.911 12 C -0.006 4.006 13 C -0.131 4.131 14 C -0.016 4.016 15 C -0.186 4.186 16 C 0.535 3.465 17 O -0.545 6.545 18 O -0.495 6.495 19 C 0.143 3.857 20 F -0.133 7.133 21 C -0.152 4.152 22 H 0.265 0.735 23 H -0.029 1.029 24 H 0.003 0.997 25 H 0.339 0.661 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.162 0.838 29 H 0.179 0.821 30 H 0.436 0.564 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 -17.573 -5.387 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.316 5.316 11 C -0.040 4.040 12 C -0.007 4.007 13 C -0.150 4.150 14 C -0.033 4.033 15 C -0.188 4.188 16 C 0.380 3.620 17 O -0.437 6.437 18 O -0.309 6.309 19 C 0.123 3.877 20 F -0.111 7.111 21 C -0.172 4.172 22 H 0.074 0.926 23 H -0.011 1.011 24 H 0.021 0.979 25 H 0.157 0.843 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.180 0.820 29 H 0.196 0.804 30 H 0.298 0.702 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.641 -17.284 -4.401 19.403 hybrid contribution 0.219 0.350 -0.177 0.449 sum 7.859 -16.934 -4.578 19.222 Atomic orbital electron populations 1.70075 1.07684 1.27988 1.51523 1.25890 0.95744 1.03200 0.94654 0.85375 0.78463 0.78232 0.78493 1.19576 1.20909 1.19133 1.21544 0.93838 0.91470 1.50575 0.91810 1.19243 0.90572 0.88381 0.93827 1.60590 1.20485 1.00704 1.49780 1.21002 0.93712 0.87214 1.02069 1.20027 0.94363 0.93592 0.92732 1.21450 0.97906 0.97080 0.98535 1.21591 0.92154 0.92577 0.97024 1.19224 1.03919 1.01434 0.94204 1.20557 0.79146 0.80872 0.81389 1.90940 1.58023 1.60388 1.34327 1.84481 1.59797 1.53974 1.32663 1.17872 0.95189 0.94237 0.80370 1.91546 1.87557 1.86218 1.45828 1.21064 0.98668 0.96688 1.00739 0.92616 1.01147 0.97861 0.84313 0.90636 0.93011 0.82027 0.80375 0.70165 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -29.54 9.32 25.60 0.24 -29.30 16 8 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.21 10.48 5.44 85.56 0.47 10.94 16 10 N -0.68 -26.96 6.48 -521.98 -3.38 -30.35 16 11 C 0.09 2.72 5.80 85.55 0.50 3.21 16 12 C -0.01 -0.16 5.40 -19.82 -0.11 -0.27 16 13 C -0.13 -2.55 9.67 22.23 0.22 -2.33 16 14 C -0.02 -0.28 9.62 22.53 0.22 -0.06 16 15 C -0.19 -4.33 5.88 -20.06 -0.12 -4.44 16 16 C 0.53 12.16 8.27 70.28 0.58 12.74 16 17 O -0.54 -16.42 16.13 19.89 0.32 -16.10 16 18 O -0.50 -6.66 12.68 -56.39 -0.72 -7.38 16 19 C 0.14 3.94 7.29 22.69 0.17 4.10 16 20 F -0.13 -4.22 15.55 44.97 0.70 -3.52 16 21 C -0.15 -4.08 9.66 22.28 0.22 -3.86 16 22 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 23 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.34 12.46 8.71 -89.69 -0.78 11.68 16 26 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 27 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.18 1.98 7.61 -2.91 -0.02 1.96 16 30 H 0.44 1.88 9.11 -74.06 -0.67 1.21 16 31 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -69.68 286.90 1.79 -67.90 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -0.28 Total: 7.28 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 2.83 Total: -8.60 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -3.10 Total: -84.89 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.39 Total: -23.48 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.70 Total: -3.52 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -69.68 1.79 -67.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068311.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.407 kcal (2) G-P(sol) polarization free energy of solvation -69.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds