Wall clock time and date at job start Sun Mar 29 2020 23:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21293 * 119.99634 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99584 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00289 * 359.97438 * 14 13 11 16 16 C 1.38960 * 119.99823 * 179.97438 * 14 13 11 17 17 N 1.31415 * 119.99691 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 119.99926 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47446 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47264 * 120.00362 * 18 16 14 21 21 H 1.48499 * 109.47155 * 240.00031 * 18 16 14 22 22 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 23 23 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 24 24 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 25 25 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 26 26 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 27 27 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 28 28 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 29 29 H 0.96998 * 120.00197 * 359.97438 * 13 11 10 30 30 H 0.97001 * 119.99293 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6162 -2.2618 2.3431 13 7 0.5965 -4.1127 1.6671 14 6 0.3760 -4.5132 2.9597 15 1 0.7148 -3.8987 3.7807 16 6 -0.2835 -5.7097 3.2134 17 7 -0.6953 -6.4576 2.2144 18 14 -0.5833 -6.2557 4.9744 19 1 -0.0258 -5.2443 5.9080 20 1 -2.0434 -6.3929 5.2084 21 1 0.0803 -7.5636 5.2069 22 1 -0.3632 0.0003 1.0278 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8901 -0.5135 25 1 4.3371 2.6891 0.8845 26 1 4.5361 -2.6225 -0.8818 27 1 0.5237 -2.4007 -0.5137 28 1 2.0827 -3.2597 -0.5134 29 1 0.2925 -4.6648 0.9298 30 1 -1.1554 -7.2930 2.3916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632151155.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:23 Heat of formation + Delta-G solvation = -102.165403 kcal Electronic energy + Delta-G solvation = -18363.548448 eV Core-core repulsion = 15158.578725 eV Total energy + Delta-G solvation = -3204.969723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.52589 -40.12551 -39.18037 -38.09080 -36.03379 -35.17945 -33.73439 -33.17117 -30.33412 -28.59572 -26.59912 -24.38939 -23.79032 -21.13225 -20.37099 -19.90069 -19.65869 -19.06950 -17.81249 -16.89107 -16.69681 -16.28706 -16.10562 -15.68594 -15.21115 -14.92852 -14.58274 -14.20831 -13.73688 -13.57179 -13.47330 -13.41445 -13.01559 -12.76966 -12.52418 -12.39949 -12.13705 -11.89778 -11.51097 -11.45482 -10.58572 -10.39309 -10.03961 -9.99966 -8.45878 -5.93798 -0.37798 -0.16991 1.36904 1.43378 1.56212 1.80801 2.05825 2.26104 2.34793 2.59819 3.21231 3.23478 3.31668 3.62194 3.77269 3.97300 4.24930 4.42893 4.55638 4.62959 4.75313 4.87768 4.92171 5.27933 5.43395 5.68600 6.00929 6.44592 6.50127 6.60367 6.83998 7.13993 7.57006 8.12861 8.71269 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.005187 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.616485 B = 5396.794056 C = 5540.196507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.212 3.788 3 N -0.543 5.543 4 C 0.504 3.496 5 O -0.460 6.460 6 N -0.574 5.574 7 C 0.387 3.613 8 O -0.476 6.476 9 C -0.187 4.187 10 C -0.071 4.071 11 C 0.448 3.552 12 O -0.635 6.635 13 N -0.567 5.567 14 C -0.332 4.332 15 H 0.075 0.925 16 C -0.008 4.008 17 N -0.916 5.916 18 Si 0.987 3.013 19 H -0.277 1.277 20 H -0.269 1.269 21 H -0.272 1.272 22 H 0.081 0.919 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.430 0.570 26 H 0.428 0.572 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.400 0.600 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 8.116 -8.904 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 N -0.271 5.271 4 C 0.199 3.801 5 O -0.266 6.266 6 N -0.312 5.312 7 C 0.201 3.799 8 O -0.286 6.286 9 C -0.193 4.193 10 C -0.112 4.112 11 C 0.236 3.764 12 O -0.523 6.523 13 N -0.203 5.203 14 C -0.462 4.462 15 H 0.093 0.907 16 C -0.208 4.208 17 N -0.556 5.556 18 Si 0.812 3.188 19 H -0.202 1.202 20 H -0.194 1.194 21 H -0.197 1.197 22 H 0.100 0.900 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.293 0.707 26 H 0.292 0.708 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.234 0.766 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.209 9.258 -8.299 12.841 hybrid contribution -0.157 -1.328 0.716 1.517 sum 3.052 7.931 -7.583 11.389 Atomic orbital electron populations 1.20986 0.85163 1.05997 1.04313 1.21752 0.98836 0.85638 0.86985 1.67890 1.08886 1.31486 1.18800 1.19979 0.84018 0.84984 0.91096 1.84639 1.75930 1.29856 1.36201 1.67372 1.44380 0.99087 1.20325 1.19071 0.86803 0.84761 0.89282 1.84780 1.73593 1.34289 1.35965 1.21175 0.93858 0.97989 1.06269 1.20337 1.03242 0.93303 0.94327 1.20586 0.82108 0.82372 0.91374 1.90521 1.56941 1.56677 1.48164 1.41868 1.50945 1.19316 1.08198 1.19635 1.36229 1.05236 0.85050 0.90735 1.25929 0.96094 0.95560 1.03202 1.69657 1.39271 1.14196 1.32526 0.84954 0.78326 0.78013 0.77557 1.20218 1.19439 1.19735 0.90015 0.87836 0.87473 0.70733 0.70842 0.84963 0.86017 0.76588 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 9.83 71.24 0.70 -1.87 16 2 C 0.21 6.50 6.82 42.45 0.29 6.79 16 3 N -0.54 -17.35 10.40 -301.71 -3.14 -20.49 16 4 C 0.50 16.06 8.71 180.58 1.57 17.63 16 5 O -0.46 -11.73 13.64 -87.58 -1.19 -12.92 16 6 N -0.57 -19.48 10.49 -426.36 -4.47 -23.95 16 7 C 0.39 12.78 7.81 84.84 0.66 13.45 16 8 O -0.48 -13.84 12.74 -88.14 -1.12 -14.96 16 9 C -0.19 -5.96 4.42 -19.59 -0.09 -6.05 16 10 C -0.07 -2.15 5.28 29.10 0.15 -2.00 16 11 C 0.45 19.97 7.78 87.66 0.68 20.66 16 12 O -0.64 -34.46 15.61 -3.07 -0.05 -34.51 16 13 N -0.57 -27.38 5.29 -306.97 -1.62 -29.00 16 14 C -0.33 -18.26 9.68 84.04 0.81 -17.45 16 15 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 16 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 17 N -0.92 -47.41 13.05 21.67 0.28 -47.13 16 18 Si 0.99 42.02 29.55 68.60 2.03 44.04 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 22 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.11 2.06 6.06 -2.39 -0.01 2.04 16 25 H 0.43 6.60 9.06 -74.06 -0.67 5.93 16 26 H 0.43 6.67 9.06 -74.06 -0.67 6.00 16 27 H 0.13 3.04 6.07 -2.38 -0.01 3.02 16 28 H 0.12 3.00 7.63 -2.39 -0.02 2.98 16 29 H 0.40 17.94 7.90 -92.71 -0.73 17.21 16 30 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -76.37 275.43 -4.86 -81.23 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.83 Total: 26.45 kcal Atomic # 6 Polarization: 25.99 SS G_CDS: 5.25 Total: 31.24 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -8.95 Total: -120.57 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -2.37 Total: -62.39 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -76.37 -4.86 -81.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632151155.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.936 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds