Wall clock time and date at job start Sun Mar 29 2020 23:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33228 * 126.01580 * 2 1 4 4 C 1.31539 * 109.76006 * 180.16228 * 3 2 1 5 5 O 1.35201 * 125.49016 * 179.86139 * 4 3 2 6 6 N 1.34944 * 109.01162 * 359.59654 * 4 3 2 7 7 H 0.96998 * 126.53757 * 180.24294 * 6 4 3 8 8 C 1.36711 * 126.02182 * 179.72057 * 2 1 3 9 9 C 1.46378 * 126.82550 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00195 * 103.71299 * 9 8 2 11 11 N 1.34776 * 120.00123 * 283.71099 * 9 8 2 12 12 C 1.46505 * 119.99833 * 5.00464 * 11 9 8 13 13 C 1.46505 * 120.00514 * 185.01039 * 11 9 8 14 14 H 1.09004 * 109.46517 * 359.97438 * 13 11 9 15 15 C 1.52994 * 109.47401 * 120.00041 * 13 11 9 16 16 C 1.50698 * 109.46949 * 240.00072 * 13 11 9 17 17 H 1.08004 * 120.00212 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99921 * 179.97438 * 16 13 11 19 19 N 1.31507 * 119.99772 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00081 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47128 * 89.99957 * 20 18 16 22 22 H 1.48489 * 109.47445 * 210.00239 * 20 18 16 23 23 H 1.48508 * 109.47187 * 330.00446 * 20 18 16 24 24 H 1.08997 * 109.47219 * 270.28016 * 1 2 3 25 25 H 1.09001 * 109.47832 * 30.28109 * 1 2 3 26 26 H 1.09006 * 109.47003 * 150.28079 * 1 2 3 27 27 H 0.96707 * 114.00001 * 269.68758 * 5 4 3 28 28 H 1.08998 * 109.46775 * 94.47404 * 12 11 9 29 29 H 1.09000 * 109.47060 * 214.47267 * 12 11 9 30 30 H 1.08991 * 109.47156 * 334.47512 * 12 11 9 31 31 H 1.08999 * 109.47177 * 180.02562 * 15 13 11 32 32 H 1.09008 * 109.46699 * 299.99776 * 15 13 11 33 33 H 1.08999 * 109.47455 * 59.99846 * 15 13 11 34 34 H 0.96999 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2903 1.0776 0.0000 4 6 3.5531 0.7094 -0.0035 5 8 4.6148 1.5465 -0.0072 6 7 3.6180 -0.6384 0.0031 7 1 4.4243 -1.1778 0.0057 8 6 2.3109 -1.1057 0.0054 9 6 1.8792 -2.5044 0.0117 10 8 1.9389 -3.1644 -1.0094 11 7 1.4157 -3.0615 1.1480 12 6 1.2405 -2.2397 2.3482 13 6 1.0872 -4.4888 1.1832 14 1 1.2803 -4.9302 0.2054 15 6 1.9503 -5.1850 2.2372 16 6 -0.3686 -4.6606 1.5327 17 1 -0.9871 -3.7934 1.7112 18 6 -0.9109 -5.9249 1.6246 19 7 -0.1576 -6.9808 1.4077 20 14 -2.7153 -6.1380 2.0585 21 1 -3.5255 -6.1508 0.8141 22 1 -2.9020 -7.4202 2.7839 23 1 -3.1530 -5.0122 2.9225 24 1 -0.3633 0.0050 1.0276 25 1 -0.3635 0.8874 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 4.9241 1.7857 -0.8917 28 1 0.2108 -1.8862 2.3993 29 1 1.4642 -2.8362 3.2327 30 1 1.9162 -1.3856 2.3055 31 1 1.7062 -6.2470 2.2630 32 1 3.0033 -5.0607 1.9843 33 1 1.7568 -4.7435 3.2148 34 1 -0.5390 -7.8703 1.4727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568191172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:04 Heat of formation + Delta-G solvation = -11.800962 kcal Electronic energy + Delta-G solvation = -19068.988670 eV Core-core repulsion = 16003.770538 eV Total energy + Delta-G solvation = -3065.218132 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14855 -38.92722 -37.41798 -35.43906 -33.19991 -32.93279 -30.83550 -29.30633 -26.93892 -26.07687 -25.25707 -23.02396 -21.54135 -20.33037 -19.44146 -18.39907 -17.22900 -16.45187 -16.28444 -15.64808 -15.46175 -14.63560 -14.22211 -13.87182 -13.30815 -12.94661 -12.76333 -12.56319 -12.42453 -12.27933 -11.86016 -11.62100 -11.60147 -11.09545 -10.87140 -10.81747 -10.32775 -10.24650 -10.19389 -10.00550 -9.34496 -9.22790 -8.48405 -8.18672 -7.73883 -6.11894 -4.19937 1.59705 2.33553 2.77897 3.26047 3.26658 3.33018 3.35416 3.74011 4.05471 4.37153 4.87520 5.05165 5.19206 5.22136 5.70612 5.80699 5.87772 5.99028 6.04399 6.06961 6.29403 6.49700 6.63823 6.67881 6.74313 6.94432 7.28356 7.39238 7.55495 7.64451 7.86017 7.92443 8.09875 8.36022 8.69757 8.88057 9.46663 10.93654 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.035857 B = 0.005809 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.682298 B = 4818.985176 C = 5158.391508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.063 3.937 3 N -0.481 5.481 4 C 0.380 3.620 5 O -0.442 6.442 6 N -0.546 5.546 7 H 0.423 0.577 8 C -0.040 4.040 9 C 0.577 3.423 10 O -0.537 6.537 11 N -0.573 5.573 12 C 0.087 3.913 13 C 0.257 3.743 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.525 4.525 17 H 0.062 0.938 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.401 0.599 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.010 0.990 33 H 0.032 0.968 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 11.934 -0.191 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 N -0.212 5.212 4 C 0.080 3.920 5 O -0.243 6.243 6 N -0.162 5.162 7 H 0.262 0.738 8 C -0.158 4.158 9 C 0.360 3.640 10 O -0.414 6.414 11 N -0.303 5.303 12 C -0.057 4.057 13 C 0.158 3.842 14 H 0.083 0.917 15 C -0.206 4.206 16 C -0.564 4.564 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.258 0.742 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.079 12.207 -0.091 13.637 hybrid contribution 0.070 -1.035 -0.165 1.051 sum 6.149 11.172 -0.257 12.754 Atomic orbital electron populations 1.20200 0.86454 1.03415 1.03150 1.20741 0.96512 0.86066 1.03627 1.70109 0.98551 1.30448 1.22048 1.20019 0.87274 0.78557 1.06151 1.84835 1.43579 1.61742 1.34126 1.43526 1.08549 1.07596 1.56570 0.73807 1.20989 0.83323 0.96223 1.15217 1.16817 0.79527 0.83160 0.84482 1.90832 1.56563 1.62087 1.31933 1.48237 1.60925 1.12164 1.08983 1.21603 1.00991 0.94385 0.88718 1.19063 0.94536 0.72855 0.97775 0.91713 1.22112 0.95435 1.04831 0.98212 1.21282 0.93954 0.92658 1.48511 0.91987 1.24888 0.98220 0.95691 0.94919 1.69866 1.35603 0.98218 1.48984 0.86467 0.84685 0.77540 0.78554 1.20538 1.21165 1.19818 0.90467 0.90653 0.90371 0.74216 0.92477 0.90896 0.92963 0.88510 0.97069 0.94861 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.23 36.00 0.37 -0.70 16 2 C 0.06 1.02 6.77 -82.54 -0.56 0.46 16 3 N -0.48 -7.62 11.22 -10.84 -0.12 -7.74 16 4 C 0.38 5.18 9.43 -89.59 -0.84 4.34 16 5 O -0.44 -4.52 13.62 -17.30 -0.24 -4.76 16 6 N -0.55 -7.53 6.24 -10.91 -0.07 -7.60 16 7 H 0.42 4.74 8.96 -40.82 -0.37 4.37 16 8 C -0.04 -0.68 5.09 -81.98 -0.42 -1.10 16 9 C 0.58 11.93 7.13 -12.99 -0.09 11.84 16 10 O -0.54 -13.15 16.45 5.16 0.08 -13.06 16 11 N -0.57 -11.92 2.75 -176.92 -0.49 -12.41 16 12 C 0.09 1.49 9.53 59.85 0.57 2.06 16 13 C 0.26 6.35 2.63 -69.08 -0.18 6.16 16 14 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 15 C -0.15 -3.39 8.94 37.15 0.33 -3.06 16 16 C -0.53 -13.74 8.37 -34.44 -0.29 -14.02 16 17 H 0.06 1.59 7.52 -52.48 -0.39 1.20 16 18 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 27 H 0.40 1.93 9.06 45.56 0.41 2.35 16 28 H 0.06 0.94 8.00 -51.93 -0.42 0.53 16 29 H 0.07 1.22 6.44 -51.93 -0.33 0.89 16 30 H 0.05 0.80 6.49 -51.93 -0.34 0.47 16 31 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 32 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 33 H 0.03 0.70 6.69 -51.93 -0.35 0.36 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -32.30 292.70 -5.29 -37.58 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.27 Total: 4.26 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.21 Total: 7.62 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.05 Total: -51.60 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.15 Total: -17.82 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.30 -5.29 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568191172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.782 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds