Wall clock time and date at job start Sun Mar 29 2020 23:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33228 * 126.01580 * 2 1 4 4 C 1.31539 * 109.76006 * 180.16228 * 3 2 1 5 5 O 1.35201 * 125.49016 * 179.86139 * 4 3 2 6 6 N 1.34944 * 109.01162 * 359.59654 * 4 3 2 7 7 H 0.96998 * 126.53757 * 180.24294 * 6 4 3 8 8 C 1.36711 * 126.02182 * 179.72057 * 2 1 3 9 9 C 1.46378 * 126.82550 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00195 * 103.71299 * 9 8 2 11 11 N 1.34776 * 120.00123 * 283.71099 * 9 8 2 12 12 C 1.46505 * 119.99833 * 5.00464 * 11 9 8 13 13 C 1.46505 * 120.00514 * 185.01039 * 11 9 8 14 14 H 1.09004 * 109.46517 * 359.97438 * 13 11 9 15 15 C 1.52994 * 109.47401 * 120.00041 * 13 11 9 16 16 C 1.50698 * 109.46949 * 240.00072 * 13 11 9 17 17 H 1.08004 * 120.00212 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99921 * 179.97438 * 16 13 11 19 19 N 1.31507 * 119.99772 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00081 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47128 * 89.99957 * 20 18 16 22 22 H 1.48489 * 109.47445 * 210.00239 * 20 18 16 23 23 H 1.48508 * 109.47187 * 330.00446 * 20 18 16 24 24 H 1.08997 * 109.47219 * 270.28016 * 1 2 3 25 25 H 1.09001 * 109.47832 * 30.28109 * 1 2 3 26 26 H 1.09006 * 109.47003 * 150.28079 * 1 2 3 27 27 H 0.96707 * 114.00001 * 269.68758 * 5 4 3 28 28 H 1.08998 * 109.46775 * 94.47404 * 12 11 9 29 29 H 1.09000 * 109.47060 * 214.47267 * 12 11 9 30 30 H 1.08991 * 109.47156 * 334.47512 * 12 11 9 31 31 H 1.08999 * 109.47177 * 180.02562 * 15 13 11 32 32 H 1.09008 * 109.46699 * 299.99776 * 15 13 11 33 33 H 1.08999 * 109.47455 * 59.99846 * 15 13 11 34 34 H 0.96999 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2903 1.0776 0.0000 4 6 3.5531 0.7094 -0.0035 5 8 4.6148 1.5465 -0.0072 6 7 3.6180 -0.6384 0.0031 7 1 4.4243 -1.1778 0.0057 8 6 2.3109 -1.1057 0.0054 9 6 1.8792 -2.5044 0.0117 10 8 1.9389 -3.1644 -1.0094 11 7 1.4157 -3.0615 1.1480 12 6 1.2405 -2.2397 2.3482 13 6 1.0872 -4.4888 1.1832 14 1 1.2803 -4.9302 0.2054 15 6 1.9503 -5.1850 2.2372 16 6 -0.3686 -4.6606 1.5327 17 1 -0.9871 -3.7934 1.7112 18 6 -0.9109 -5.9249 1.6246 19 7 -0.1576 -6.9808 1.4077 20 14 -2.7153 -6.1380 2.0585 21 1 -3.5255 -6.1508 0.8141 22 1 -2.9020 -7.4202 2.7839 23 1 -3.1530 -5.0122 2.9225 24 1 -0.3633 0.0050 1.0276 25 1 -0.3635 0.8874 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 4.9241 1.7857 -0.8917 28 1 0.2108 -1.8862 2.3993 29 1 1.4642 -2.8362 3.2327 30 1 1.9162 -1.3856 2.3055 31 1 1.7062 -6.2470 2.2630 32 1 3.0033 -5.0607 1.9843 33 1 1.7568 -4.7435 3.2148 34 1 -0.5390 -7.8703 1.4727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568191172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:03 Heat of formation + Delta-G solvation = -38.683545 kcal Electronic energy + Delta-G solvation = -19070.154386 eV Core-core repulsion = 16003.770538 eV Total energy + Delta-G solvation = -3066.383848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.32792 -40.54114 -38.36778 -37.22096 -34.83640 -34.33080 -32.27515 -30.94470 -28.25396 -27.56360 -27.23232 -24.40389 -22.86706 -21.79562 -20.61749 -19.74475 -18.67425 -18.21268 -17.75235 -17.18580 -16.72835 -16.37756 -15.81093 -15.06406 -14.85654 -14.48678 -14.22417 -14.03347 -13.62681 -13.46737 -13.42294 -13.11016 -12.93786 -12.90475 -12.71932 -12.66109 -12.17627 -12.09923 -11.50359 -11.19528 -11.15128 -10.92484 -10.51118 -9.46445 -9.40311 -8.13167 -6.28910 0.42656 1.08676 1.45460 1.46666 1.55112 1.58138 1.87007 2.30751 2.48406 2.90611 3.16035 3.59853 3.89450 4.04181 4.34239 4.59340 4.65014 4.74106 4.79882 4.86227 4.87929 4.93975 4.99529 5.02426 5.41815 5.44545 5.54231 5.65871 5.80971 5.99158 6.14397 6.62807 6.66013 6.71071 6.76810 7.13407 7.42867 8.91502 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.035857 B = 0.005809 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.682298 B = 4818.985176 C = 5158.391508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.071 3.929 3 N -0.504 5.504 4 C 0.409 3.591 5 O -0.438 6.438 6 N -0.537 5.537 7 H 0.434 0.566 8 C -0.068 4.068 9 C 0.581 3.419 10 O -0.587 6.587 11 N -0.575 5.575 12 C 0.088 3.912 13 C 0.261 3.739 14 H 0.015 0.985 15 C -0.134 4.134 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.018 3.982 19 N -0.917 5.917 20 Si 0.963 3.037 21 H -0.282 1.282 22 H -0.283 1.283 23 H -0.261 1.261 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.429 0.571 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.049 0.951 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 14.003 0.824 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 N -0.235 5.235 4 C 0.108 3.892 5 O -0.242 6.242 6 N -0.155 5.155 7 H 0.275 0.725 8 C -0.185 4.185 9 C 0.366 3.634 10 O -0.468 6.468 11 N -0.304 5.304 12 C -0.054 4.054 13 C 0.160 3.840 14 H 0.033 0.967 15 C -0.192 4.192 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.182 4.182 19 N -0.556 5.556 20 Si 0.789 3.211 21 H -0.208 1.208 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.291 0.709 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.194 14.312 0.933 15.622 hybrid contribution 0.162 -1.570 -0.526 1.663 sum 6.356 12.742 0.407 14.245 Atomic orbital electron populations 1.20254 0.85661 1.03349 1.04018 1.20986 0.97217 0.85839 1.02168 1.70166 0.99377 1.30197 1.23793 1.20100 0.87603 0.78624 1.02915 1.84807 1.42175 1.60645 1.36580 1.43411 1.07946 1.07864 1.56280 0.72499 1.20292 0.84986 0.94181 1.19010 1.17176 0.78432 0.84311 0.83464 1.90796 1.58392 1.63931 1.33639 1.48165 1.60665 1.11166 1.10428 1.21753 1.02039 0.94520 0.87099 1.18694 0.94554 0.75188 0.95579 0.96671 1.21901 0.95755 1.03082 0.98499 1.21545 0.94782 0.92880 1.48296 0.91716 1.25689 1.02236 0.95451 0.94843 1.70003 1.37302 0.98577 1.49753 0.85473 0.79640 0.77846 0.78186 1.20841 1.20807 1.18461 0.89101 0.88873 0.92201 0.70893 0.91753 0.90450 0.90855 0.91012 0.95877 0.93182 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 10.23 71.23 0.73 -1.32 16 2 C 0.07 2.18 6.77 41.99 0.28 2.46 16 3 N -0.50 -14.66 11.22 -301.68 -3.39 -18.04 16 4 C 0.41 9.94 9.43 179.99 1.70 11.64 16 5 O -0.44 -7.28 13.62 -84.81 -1.16 -8.43 16 6 N -0.54 -13.75 6.24 -300.15 -1.87 -15.63 16 7 H 0.43 8.92 8.96 -92.71 -0.83 8.09 16 8 C -0.07 -2.24 5.09 39.80 0.20 -2.04 16 9 C 0.58 24.32 7.13 86.36 0.62 24.93 16 10 O -0.59 -29.92 16.45 -4.45 -0.07 -29.99 16 11 N -0.58 -23.98 2.75 -831.84 -2.29 -26.27 16 12 C 0.09 2.88 9.53 127.77 1.22 4.10 16 13 C 0.26 13.18 2.63 44.24 0.12 13.30 16 14 H 0.02 0.92 6.91 -2.38 -0.02 0.91 16 15 C -0.13 -6.20 8.94 71.98 0.64 -5.56 16 16 C -0.54 -28.26 8.37 25.60 0.21 -28.05 16 17 H 0.06 3.29 7.52 -2.91 -0.02 3.27 16 18 C 0.02 0.93 5.30 84.66 0.45 1.38 16 19 N -0.92 -51.58 11.32 21.45 0.24 -51.34 16 20 Si 0.96 42.06 29.54 68.60 2.03 44.09 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 1.84 7.93 -2.38 -0.02 1.82 16 27 H 0.43 2.35 9.06 -74.05 -0.67 1.68 16 28 H 0.06 2.01 8.00 -2.39 -0.02 1.99 16 29 H 0.08 2.45 6.44 -2.39 -0.02 2.43 16 30 H 0.07 2.09 6.49 -2.39 -0.02 2.08 16 31 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 32 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 2.10 6.69 -2.39 -0.02 2.08 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -70.53 292.70 -0.69 -71.21 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.35 Total: 13.55 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 6.17 Total: 20.85 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -7.31 Total: -111.28 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.23 Total: -38.42 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -70.53 -0.69 -71.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568191172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.531 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds