Wall clock time and date at job start Sun Mar 29 2020 23:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47072 * 2 1 4 4 C 1.35996 * 116.99677 * 179.97438 * 3 2 1 5 5 C 1.39691 * 125.66988 * 179.97438 * 4 3 2 6 6 C 1.37986 * 107.64019 * 180.02562 * 5 4 3 7 7 C 1.47166 * 126.43806 * 180.02562 * 6 5 4 8 8 O 1.21634 * 119.99853 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00147 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46566 * 324.99334 * 10 9 7 12 12 C 1.52997 * 109.47289 * 84.99600 * 10 9 7 13 13 C 1.50697 * 109.47015 * 205.00057 * 10 9 7 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47155 * 89.99872 * 17 15 13 19 19 H 1.48499 * 109.47102 * 210.00327 * 17 15 13 20 20 H 1.48499 * 109.46909 * 330.00049 * 17 15 13 21 21 N 1.36670 * 107.12821 * 0.26321 * 6 5 4 22 22 H 0.96993 * 126.09840 * 179.72167 * 21 6 5 23 23 N 1.31222 * 125.67716 * 0.04356 * 4 3 2 24 24 H 1.09004 * 109.47688 * 300.00196 * 1 2 3 25 25 H 1.09007 * 109.47129 * 60.00068 * 1 2 3 26 26 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46952 * 239.99912 * 2 1 3 28 28 H 1.08998 * 109.46983 * 119.99803 * 2 1 3 29 29 H 1.08002 * 126.18275 * 0.05479 * 5 4 3 30 30 H 0.96992 * 119.99904 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.46832 * 60.00146 * 12 10 9 33 33 H 1.09004 * 109.47261 * 300.00128 * 12 10 9 34 34 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.0134 2.7572 0.0001 6 6 5.3702 2.5056 0.0003 7 6 6.4455 3.5104 0.0006 8 8 6.1706 4.6953 0.0001 9 7 7.7348 3.1177 0.0013 10 6 8.8052 4.1180 0.0021 11 1 8.4962 4.9811 -0.5875 12 6 9.0911 4.5579 1.4393 13 6 10.0517 3.5202 -0.5977 14 1 10.0472 2.4974 -0.9444 15 6 11.1980 4.2791 -0.7039 16 7 11.2033 5.5247 -0.2821 17 14 12.7434 3.5378 -1.4467 18 1 12.7496 3.7729 -2.9130 19 1 13.9393 4.1739 -0.8382 20 1 12.7696 2.0773 -1.1794 21 7 5.5279 1.1481 -0.0051 22 1 6.3722 0.6709 -0.0101 23 7 4.2529 0.5689 0.0003 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5455 3.7306 0.0002 30 1 7.9539 2.1728 0.0020 31 1 9.8878 5.3018 1.4399 32 1 9.4000 3.6947 2.0288 33 1 8.1894 4.9903 1.8731 34 1 12.0096 6.0587 -0.3571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330237315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:19 Heat of formation + Delta-G solvation = -6.090509 kcal Electronic energy + Delta-G solvation = -18018.308308 eV Core-core repulsion = 14953.337799 eV Total energy + Delta-G solvation = -3064.970508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27996 -38.97140 -38.07706 -35.01329 -32.70697 -32.09485 -30.62466 -30.01156 -28.76608 -25.36662 -24.25128 -23.02949 -21.34945 -20.56924 -19.75653 -18.78190 -17.01989 -16.45791 -16.42006 -15.44041 -15.19696 -14.87937 -14.56821 -14.03571 -13.84046 -13.43380 -13.20702 -12.78439 -12.70078 -12.52010 -11.86864 -11.82201 -11.19885 -11.07560 -11.01917 -10.92027 -10.77620 -10.40772 -10.32719 -9.50066 -9.18557 -9.07070 -8.67048 -8.62773 -8.14476 -6.21444 -4.31842 1.28022 2.42666 2.62755 3.09594 3.19562 3.26627 3.27780 3.67010 3.82945 4.28493 4.67270 4.76730 4.84646 5.07127 5.11462 5.12108 5.34577 5.56150 5.58559 5.76077 5.79803 6.16776 6.70260 6.82091 6.92449 7.01844 7.21747 7.27080 7.39826 7.53009 7.58531 7.78328 8.02717 8.40018 8.60147 8.82142 9.35586 10.84548 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.049986 B = 0.003903 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.019417 B = 7171.602070 C = 7540.678633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.289 6.289 4 C 0.260 3.740 5 C -0.207 4.207 6 C 0.078 3.922 7 C 0.567 3.433 8 O -0.524 6.524 9 N -0.698 5.698 10 C 0.264 3.736 11 H 0.054 0.946 12 C -0.149 4.149 13 C -0.539 4.539 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.881 5.881 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.449 5.449 22 H 0.445 0.555 23 N -0.328 5.328 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.165 0.835 30 H 0.386 0.614 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.017 0.983 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.699 -10.615 1.129 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.194 6.194 4 C 0.057 3.943 5 C -0.238 4.238 6 C -0.053 4.053 7 C 0.349 3.651 8 O -0.400 6.400 9 N -0.346 5.346 10 C 0.163 3.837 11 H 0.072 0.928 12 C -0.208 4.208 13 C -0.577 4.577 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.518 5.518 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 N -0.166 5.166 22 H 0.292 0.708 23 N -0.171 5.171 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.182 0.818 30 H 0.218 0.782 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.861 -10.556 1.149 17.461 hybrid contribution 1.342 -0.542 -0.373 1.495 sum -12.519 -11.098 0.776 16.748 Atomic orbital electron populations 1.21793 0.92780 1.02821 1.03517 1.22701 0.95349 0.81423 1.02194 1.86307 1.14011 1.29459 1.89612 1.20214 0.84186 0.92103 0.97838 1.21041 0.89892 0.98045 1.14800 1.21785 0.95911 0.84416 1.03225 1.17121 0.82119 0.87030 0.78862 1.90829 1.82814 1.15967 1.50362 1.46543 1.05487 1.11249 1.71280 1.18884 0.82954 0.87406 0.94418 0.92798 1.22103 1.00538 1.01106 0.97020 1.21164 0.95364 0.99207 1.41984 0.92000 1.24880 0.98899 0.94789 0.95006 1.69890 1.28981 1.07511 1.45417 0.86415 0.82013 0.79173 0.79307 1.20475 1.20984 1.19834 1.46092 1.06740 1.03779 1.60023 0.70849 1.77235 0.88276 1.20371 1.31171 0.91498 0.91497 0.90351 0.91819 0.91830 0.81755 0.78225 0.88832 0.95298 0.96361 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.59 6.33 37.16 0.24 0.83 16 3 O -0.29 -3.88 10.22 -19.73 -0.20 -4.09 16 4 C 0.26 3.91 7.85 -17.27 -0.14 3.78 16 5 C -0.21 -3.31 10.63 -39.13 -0.42 -3.73 16 6 C 0.08 1.28 7.12 -82.18 -0.59 0.69 16 7 C 0.57 11.15 7.77 -12.64 -0.10 11.05 16 8 O -0.52 -12.24 16.56 5.25 0.09 -12.15 16 9 N -0.70 -13.73 5.07 -56.09 -0.28 -14.02 16 10 C 0.26 6.43 2.56 -69.08 -0.18 6.26 16 11 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 12 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 13 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -24.08 11.32 55.43 0.63 -23.45 16 17 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 N -0.45 -6.21 7.33 33.41 0.24 -5.97 16 22 H 0.45 4.83 8.23 -182.65 -1.50 3.33 16 23 N -0.33 -4.80 12.05 30.46 0.37 -4.44 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 30 H 0.39 6.30 7.71 -40.82 -0.31 5.99 16 31 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -30.21 299.93 -5.96 -36.16 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.45 Total: 5.79 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.85 Total: 2.63 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.96 Total: -47.87 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.11 Total: -16.24 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.21 -5.96 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330237315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.074 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds