Wall clock time and date at job start Sun Mar 29 2020 23:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47072 * 2 1 4 4 C 1.35996 * 116.99677 * 179.97438 * 3 2 1 5 5 C 1.39691 * 125.66988 * 179.97438 * 4 3 2 6 6 C 1.37986 * 107.64019 * 180.02562 * 5 4 3 7 7 C 1.47166 * 126.43806 * 180.02562 * 6 5 4 8 8 O 1.21634 * 119.99853 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00147 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46566 * 324.99334 * 10 9 7 12 12 C 1.52997 * 109.47289 * 84.99600 * 10 9 7 13 13 C 1.50697 * 109.47015 * 205.00057 * 10 9 7 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47155 * 89.99872 * 17 15 13 19 19 H 1.48499 * 109.47102 * 210.00327 * 17 15 13 20 20 H 1.48499 * 109.46909 * 330.00049 * 17 15 13 21 21 N 1.36670 * 107.12821 * 0.26321 * 6 5 4 22 22 H 0.96993 * 126.09840 * 179.72167 * 21 6 5 23 23 N 1.31222 * 125.67716 * 0.04356 * 4 3 2 24 24 H 1.09004 * 109.47688 * 300.00196 * 1 2 3 25 25 H 1.09007 * 109.47129 * 60.00068 * 1 2 3 26 26 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46952 * 239.99912 * 2 1 3 28 28 H 1.08998 * 109.46983 * 119.99803 * 2 1 3 29 29 H 1.08002 * 126.18275 * 0.05479 * 5 4 3 30 30 H 0.96992 * 119.99904 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.46832 * 60.00146 * 12 10 9 33 33 H 1.09004 * 109.47261 * 300.00128 * 12 10 9 34 34 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.0134 2.7572 0.0001 6 6 5.3702 2.5056 0.0003 7 6 6.4455 3.5104 0.0006 8 8 6.1706 4.6953 0.0001 9 7 7.7348 3.1177 0.0013 10 6 8.8052 4.1180 0.0021 11 1 8.4962 4.9811 -0.5875 12 6 9.0911 4.5579 1.4393 13 6 10.0517 3.5202 -0.5977 14 1 10.0472 2.4974 -0.9444 15 6 11.1980 4.2791 -0.7039 16 7 11.2033 5.5247 -0.2821 17 14 12.7434 3.5378 -1.4467 18 1 12.7496 3.7729 -2.9130 19 1 13.9393 4.1739 -0.8382 20 1 12.7696 2.0773 -1.1794 21 7 5.5279 1.1481 -0.0051 22 1 6.3722 0.6709 -0.0101 23 7 4.2529 0.5689 0.0003 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5455 3.7306 0.0002 30 1 7.9539 2.1728 0.0020 31 1 9.8878 5.3018 1.4399 32 1 9.4000 3.6947 2.0288 33 1 8.1894 4.9903 1.8731 34 1 12.0096 6.0587 -0.3571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330237315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:19 Heat of formation + Delta-G solvation = -29.587929 kcal Electronic energy + Delta-G solvation = -18019.327232 eV Core-core repulsion = 14953.337799 eV Total energy + Delta-G solvation = -3065.989433 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.51792 -40.47967 -39.22791 -36.85635 -34.50298 -33.05391 -31.99009 -31.13949 -30.46994 -27.35821 -25.49777 -24.17355 -22.57054 -22.07744 -21.28721 -20.28057 -18.26326 -18.06441 -17.40987 -17.24843 -16.69019 -16.24984 -16.14463 -15.28344 -15.11553 -14.76601 -14.69438 -14.41201 -13.77665 -13.54043 -13.40687 -13.03365 -12.91077 -12.79344 -12.63275 -12.27900 -12.16518 -11.96063 -11.82595 -11.19169 -11.12881 -10.62347 -10.33694 -9.91800 -9.78172 -8.18872 -6.36559 -0.05718 1.33071 1.39267 1.46683 1.47015 1.57250 1.86980 2.15251 2.35968 2.53079 3.12592 3.51293 3.69274 4.07451 4.14001 4.25999 4.41868 4.43233 4.73797 4.82402 4.90731 4.96376 5.02926 5.05540 5.24891 5.34608 5.48306 5.61379 5.76888 5.88381 6.05803 6.22528 6.39509 6.66166 6.74216 7.15651 7.37239 8.87510 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.049986 B = 0.003903 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.019417 B = 7171.602070 C = 7540.678633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.298 6.298 4 C 0.257 3.743 5 C -0.211 4.211 6 C 0.071 3.929 7 C 0.573 3.427 8 O -0.566 6.566 9 N -0.690 5.690 10 C 0.270 3.730 11 H 0.008 0.992 12 C -0.138 4.138 13 C -0.549 4.549 14 H 0.077 0.923 15 C 0.017 3.983 16 N -0.915 5.915 17 Si 0.972 3.028 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.259 1.259 21 N -0.431 5.431 22 H 0.459 0.541 23 N -0.319 5.319 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.166 0.834 30 H 0.405 0.595 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.016 0.984 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -13.063 0.945 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.203 6.203 4 C 0.054 3.946 5 C -0.243 4.243 6 C -0.061 4.061 7 C 0.356 3.644 8 O -0.444 6.444 9 N -0.338 5.338 10 C 0.168 3.832 11 H 0.026 0.974 12 C -0.196 4.196 13 C -0.587 4.587 14 H 0.095 0.905 15 C -0.184 4.184 16 N -0.553 5.553 17 Si 0.797 3.203 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.183 1.183 21 N -0.151 5.151 22 H 0.308 0.692 23 N -0.163 5.163 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.183 0.817 30 H 0.240 0.760 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.228 -13.071 0.967 19.345 hybrid contribution 1.345 0.185 -0.313 1.393 sum -12.884 -12.886 0.654 18.234 Atomic orbital electron populations 1.21824 0.90585 1.04438 1.03526 1.23017 0.97081 0.79862 1.02462 1.86323 1.12934 1.31662 1.89341 1.20226 0.85020 0.91588 0.97716 1.21183 0.89989 0.98796 1.14305 1.21108 0.94861 0.84797 1.05288 1.17374 0.82433 0.87045 0.77499 1.90808 1.83465 1.18068 1.52101 1.46195 1.04826 1.11520 1.71289 1.18499 0.83885 0.87038 0.93801 0.97365 1.21939 0.99618 1.00985 0.97103 1.21515 0.95568 0.99886 1.41779 0.90486 1.25764 1.02129 0.95088 0.95382 1.70037 1.29784 1.08912 1.46589 0.85345 0.77906 0.78995 0.78090 1.20489 1.21102 1.18276 1.46089 1.07326 1.02744 1.58959 0.69214 1.77242 0.88310 1.20103 1.30620 0.91470 0.91508 0.87893 0.91554 0.91508 0.81665 0.76011 0.91155 0.93783 0.96492 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.05 0.91 6.33 71.98 0.46 1.37 16 3 O -0.30 -7.54 10.22 -93.51 -0.96 -8.50 16 4 C 0.26 7.35 7.85 85.13 0.67 8.02 16 5 C -0.21 -6.59 10.63 22.56 0.24 -6.35 16 6 C 0.07 2.26 7.12 40.68 0.29 2.55 16 7 C 0.57 22.53 7.77 86.59 0.67 23.20 16 8 O -0.57 -27.11 16.56 -4.14 -0.07 -27.18 16 9 N -0.69 -26.81 5.07 -449.62 -2.28 -29.09 16 10 C 0.27 13.32 2.56 44.24 0.11 13.43 16 11 H 0.01 0.49 7.58 -2.39 -0.02 0.47 16 12 C -0.14 -6.66 9.26 71.98 0.67 -5.99 16 13 C -0.55 -27.59 8.73 25.60 0.22 -27.37 16 14 H 0.08 3.55 7.74 -2.91 -0.02 3.53 16 15 C 0.02 0.88 5.30 84.66 0.45 1.32 16 16 N -0.92 -50.79 11.32 21.45 0.24 -50.54 16 17 Si 0.97 40.43 29.54 68.60 2.03 42.46 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 N -0.43 -11.07 7.33 -48.20 -0.35 -11.43 16 22 H 0.46 8.80 8.23 -213.37 -1.76 7.04 16 23 N -0.32 -8.67 12.05 -170.76 -2.06 -10.72 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.17 5.03 8.06 -2.91 -0.02 5.01 16 30 H 0.40 12.56 7.71 -92.71 -0.72 11.84 16 31 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -64.77 299.93 -0.26 -65.03 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -1.34 Total: 20.82 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.52 Total: 9.15 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -4.45 Total: -101.78 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.02 Total: -35.67 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -64.77 -0.26 -65.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330237315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.440 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds