Wall clock time and date at job start Sun Mar 29 2020 23:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99881 * 2 1 4 4 C 1.53004 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46847 * 175.00320 * 4 3 2 6 6 N 1.46902 * 109.46697 * 294.99620 * 4 3 2 7 7 C 1.46897 * 111.00316 * 274.99972 * 6 4 3 8 8 C 1.52995 * 109.47025 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47409 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99788 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00738 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99600 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00304 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47231 * 60.00339 * 13 11 9 15 15 H 1.48510 * 109.47034 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47260 * 299.99819 * 13 11 9 17 17 C 1.50696 * 109.47466 * 54.99946 * 4 3 2 18 18 C 1.34512 * 125.79090 * 100.02284 * 17 4 3 19 19 C 1.41379 * 106.84332 * 180.02562 * 18 17 4 20 20 C 1.34512 * 106.84086 * 0.02562 * 19 18 17 21 21 C 1.50695 * 125.79226 * 179.97438 * 20 19 18 22 22 O 1.34301 * 125.79037 * 280.02880 * 17 4 3 23 23 H 1.09004 * 109.47118 * 299.99803 * 1 2 3 24 24 H 1.08993 * 109.47181 * 59.99831 * 1 2 3 25 25 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47255 * 60.00266 * 3 2 1 27 27 H 1.09008 * 109.47462 * 300.00037 * 3 2 1 28 28 H 1.00902 * 111.00288 * 38.96058 * 6 4 3 29 29 H 1.08998 * 109.47306 * 300.00224 * 7 6 4 30 30 H 1.09003 * 109.46861 * 60.00332 * 7 6 4 31 31 H 1.09001 * 109.47726 * 300.00539 * 8 7 6 32 32 H 1.09003 * 109.47191 * 60.00337 * 8 7 6 33 33 H 0.97004 * 120.00115 * 180.02562 * 12 11 9 34 34 H 1.08007 * 126.58045 * 0.02562 * 18 17 4 35 35 H 1.07997 * 126.58312 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.47797 * 179.97438 * 21 20 19 37 37 H 1.09006 * 109.47078 * 299.99936 * 21 20 19 38 38 H 1.09005 * 109.47246 * 59.99506 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9784 2.1765 -0.0902 6 7 3.9778 0.5622 1.2544 7 6 4.1207 1.5655 2.3178 8 6 4.5823 0.8811 3.6059 9 6 4.7283 1.9102 4.6971 10 1 4.5130 2.9486 4.4924 11 6 5.1358 1.5262 5.9570 12 7 5.3976 0.2617 6.2065 13 14 5.3161 2.8018 7.3097 14 1 4.0079 3.4648 7.5424 15 1 5.7643 2.1375 8.5600 16 1 6.3201 3.8171 6.9019 17 6 3.9715 0.3327 -1.1648 18 6 4.4497 0.7876 -2.3368 19 6 4.7306 -0.3467 -3.1326 20 6 4.4067 -1.4270 -2.3994 21 6 4.5367 -2.8623 -2.8398 22 8 3.9484 -1.0094 -1.2081 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.3477 -0.1744 1.5345 29 1 4.8581 2.3102 2.0181 30 1 3.1608 2.0530 2.4888 31 1 3.8453 0.1361 3.9059 32 1 5.5423 0.3940 3.4347 33 1 5.6839 -0.0086 7.0930 34 1 4.5918 1.8211 -2.6164 35 1 5.1280 -0.3461 -4.1368 36 1 4.1995 -3.5202 -2.0388 37 1 3.9255 -3.0269 -3.7272 38 1 5.5797 -3.0780 -3.0719 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184691782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:51 Heat of formation + Delta-G solvation = -40.932057 kcal Electronic energy + Delta-G solvation = -18651.994863 eV Core-core repulsion = 15689.053855 eV Total energy + Delta-G solvation = -2962.941008 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27536 -38.29753 -35.90931 -33.27553 -32.87495 -31.88836 -30.27984 -27.85133 -26.75401 -25.47611 -24.08556 -21.88994 -21.48472 -20.50713 -19.71239 -16.79850 -16.49097 -16.12503 -15.97837 -15.63958 -15.30368 -14.56023 -14.27981 -14.07430 -13.49350 -13.09684 -13.02687 -12.84743 -12.50910 -12.38512 -12.22248 -11.97022 -11.79599 -11.49151 -11.28667 -11.08244 -10.91259 -10.55811 -10.06289 -9.68067 -9.59606 -9.40237 -9.15341 -8.34066 -8.04469 -7.83304 -5.97825 -4.00915 2.01296 2.82431 3.20248 3.34139 3.38693 3.40662 3.73873 4.43693 4.65366 4.83231 4.98402 5.08072 5.24821 5.28053 5.31229 5.37838 5.38983 5.41867 5.45522 5.49317 5.61059 5.64735 5.73261 6.02250 6.16988 6.29935 6.31822 6.40819 6.75420 6.95536 7.10156 7.39629 7.56476 7.74152 7.82488 7.95698 8.10119 8.43802 9.06080 9.62625 11.13543 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.004497 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.968821 B = 6225.309068 C = 6665.437466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.030 3.970 4 C 0.166 3.834 5 H 0.116 0.884 6 N -0.679 5.679 7 C 0.064 3.936 8 C 0.026 3.974 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.892 5.892 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.036 3.964 18 C -0.227 4.227 19 C -0.216 4.216 20 C -0.026 4.026 21 C -0.071 4.071 22 O -0.147 6.147 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.352 0.648 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 -1.251 -18.181 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C -0.049 4.049 4 C 0.055 3.945 5 H 0.134 0.866 6 N -0.311 5.311 7 C -0.064 4.064 8 C -0.012 4.012 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.016 4.016 18 C -0.247 4.247 19 C -0.235 4.235 20 C -0.076 4.076 21 C -0.127 4.127 22 O -0.042 6.042 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.172 0.828 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.163 -1.729 -17.944 19.052 hybrid contribution -0.949 1.314 0.805 1.809 sum -7.112 -0.415 -17.139 18.560 Atomic orbital electron populations 1.22719 0.81282 1.02669 0.99692 1.87945 1.19404 1.26998 1.95295 1.23351 0.95017 0.85640 1.00844 1.20247 0.90492 0.95653 0.88103 0.86620 1.60591 1.53915 1.13853 1.02699 1.22262 0.98275 0.93658 0.92182 1.19052 0.97256 0.95766 0.89086 1.21119 1.45772 0.94102 0.95168 0.92805 1.24999 0.95428 0.95229 0.98646 1.69970 1.46000 1.15326 1.21828 0.86649 0.78449 0.81568 0.81248 1.20325 1.21266 1.20223 1.22181 1.02228 0.80653 0.96564 1.21418 1.08714 0.99841 0.94695 1.21386 1.08924 0.91723 1.01480 1.22372 1.03372 0.96959 0.84935 1.20228 1.02924 0.88044 1.01514 1.84055 1.64540 1.22185 1.33431 0.94025 0.94470 0.89676 0.92046 0.92971 0.82833 0.92112 0.96469 0.96691 0.95540 0.92920 0.84036 0.84157 0.90645 0.90269 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.66 9.44 -35.23 -0.33 -5.99 16 3 C 0.03 0.41 5.60 37.16 0.21 0.62 16 4 C 0.17 2.59 2.87 -68.86 -0.20 2.39 16 5 H 0.12 1.62 7.79 -51.93 -0.40 1.21 16 6 N -0.68 -12.94 6.23 -107.95 -0.67 -13.61 16 7 C 0.06 1.35 5.42 -3.83 -0.02 1.33 16 8 C 0.03 0.68 5.23 -27.89 -0.15 0.54 16 9 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 10 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.04 0.58 5.72 -35.63 -0.20 0.37 16 18 C -0.23 -3.26 10.80 -39.70 -0.43 -3.69 16 19 C -0.22 -2.92 10.81 -39.70 -0.43 -3.34 16 20 C -0.03 -0.36 7.32 -35.63 -0.26 -0.62 16 21 C -0.07 -0.70 10.42 36.00 0.38 -0.32 16 22 O -0.15 -2.53 10.52 5.71 0.06 -2.47 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.84 7.35 -51.93 -0.38 0.46 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.35 6.96 7.94 -39.29 -0.31 6.64 16 29 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 30 H 0.02 0.35 7.36 -51.93 -0.38 -0.04 16 31 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -32.50 324.04 -6.84 -39.34 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.09 Total: 2.46 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.40 Total: -14.86 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.06 Total: -40.08 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.27 Total: -8.46 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.50 -6.84 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184691782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.595 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds