Wall clock time and date at job start Sun Mar 29 2020 23:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99881 * 2 1 4 4 C 1.53004 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46847 * 175.00320 * 4 3 2 6 6 N 1.46902 * 109.46697 * 294.99620 * 4 3 2 7 7 C 1.46897 * 111.00316 * 274.99972 * 6 4 3 8 8 C 1.52995 * 109.47025 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47409 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99788 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00738 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99600 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00304 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47231 * 60.00339 * 13 11 9 15 15 H 1.48510 * 109.47034 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47260 * 299.99819 * 13 11 9 17 17 C 1.50696 * 109.47466 * 54.99946 * 4 3 2 18 18 C 1.34512 * 125.79090 * 100.02284 * 17 4 3 19 19 C 1.41379 * 106.84332 * 180.02562 * 18 17 4 20 20 C 1.34512 * 106.84086 * 0.02562 * 19 18 17 21 21 C 1.50695 * 125.79226 * 179.97438 * 20 19 18 22 22 O 1.34301 * 125.79037 * 280.02880 * 17 4 3 23 23 H 1.09004 * 109.47118 * 299.99803 * 1 2 3 24 24 H 1.08993 * 109.47181 * 59.99831 * 1 2 3 25 25 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47255 * 60.00266 * 3 2 1 27 27 H 1.09008 * 109.47462 * 300.00037 * 3 2 1 28 28 H 1.00902 * 111.00288 * 38.96058 * 6 4 3 29 29 H 1.08998 * 109.47306 * 300.00224 * 7 6 4 30 30 H 1.09003 * 109.46861 * 60.00332 * 7 6 4 31 31 H 1.09001 * 109.47726 * 300.00539 * 8 7 6 32 32 H 1.09003 * 109.47191 * 60.00337 * 8 7 6 33 33 H 0.97004 * 120.00115 * 180.02562 * 12 11 9 34 34 H 1.08007 * 126.58045 * 0.02562 * 18 17 4 35 35 H 1.07997 * 126.58312 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.47797 * 179.97438 * 21 20 19 37 37 H 1.09006 * 109.47078 * 299.99936 * 21 20 19 38 38 H 1.09005 * 109.47246 * 59.99506 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9784 2.1765 -0.0902 6 7 3.9778 0.5622 1.2544 7 6 4.1207 1.5655 2.3178 8 6 4.5823 0.8811 3.6059 9 6 4.7283 1.9102 4.6971 10 1 4.5130 2.9486 4.4924 11 6 5.1358 1.5262 5.9570 12 7 5.3976 0.2617 6.2065 13 14 5.3161 2.8018 7.3097 14 1 4.0079 3.4648 7.5424 15 1 5.7643 2.1375 8.5600 16 1 6.3201 3.8171 6.9019 17 6 3.9715 0.3327 -1.1648 18 6 4.4497 0.7876 -2.3368 19 6 4.7306 -0.3467 -3.1326 20 6 4.4067 -1.4270 -2.3994 21 6 4.5367 -2.8623 -2.8398 22 8 3.9484 -1.0094 -1.2081 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.3477 -0.1744 1.5345 29 1 4.8581 2.3102 2.0181 30 1 3.1608 2.0530 2.4888 31 1 3.8453 0.1361 3.9059 32 1 5.5423 0.3940 3.4347 33 1 5.6839 -0.0086 7.0930 34 1 4.5918 1.8211 -2.6164 35 1 5.1280 -0.3461 -4.1368 36 1 4.1995 -3.5202 -2.0388 37 1 3.9255 -3.0269 -3.7272 38 1 5.5797 -3.0780 -3.0719 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184691782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:50 Heat of formation + Delta-G solvation = -63.068917 kcal Electronic energy + Delta-G solvation = -18652.954789 eV Core-core repulsion = 15689.053855 eV Total energy + Delta-G solvation = -2963.900934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.38144 -39.44088 -37.32291 -35.23239 -33.95746 -33.29059 -31.67898 -29.42868 -27.75128 -26.48218 -25.97590 -23.19647 -22.67397 -22.21094 -20.82504 -18.54454 -17.91138 -17.28628 -17.24215 -16.80819 -16.52739 -16.34874 -15.59908 -15.39375 -15.02265 -14.30594 -14.12088 -13.86132 -13.69576 -13.60322 -13.56069 -13.35592 -12.96710 -12.87580 -12.81113 -12.59135 -12.37798 -12.26157 -11.99511 -11.43442 -11.29249 -10.70225 -10.66357 -10.55524 -9.39794 -9.04842 -8.19204 -6.31523 0.91075 1.41121 1.44864 1.52679 1.76789 2.17264 2.41180 2.72296 3.14250 3.32931 3.71057 3.90638 4.10621 4.22165 4.28501 4.31001 4.41671 4.48413 4.52393 4.58064 4.62353 4.65404 4.76244 4.79919 4.92476 4.98484 5.05442 5.15387 5.36267 5.44144 5.65287 5.73937 5.79213 6.05570 6.16039 6.22787 6.41121 6.47449 6.85769 7.38005 8.93077 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.004497 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.968821 B = 6225.309068 C = 6665.437466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.035 3.965 4 C 0.165 3.835 5 H 0.132 0.868 6 N -0.691 5.691 7 C 0.084 3.916 8 C 0.032 3.968 9 C -0.544 4.544 10 H 0.065 0.935 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.969 3.031 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.005 3.995 18 C -0.224 4.224 19 C -0.223 4.223 20 C -0.041 4.041 21 C -0.070 4.070 22 O -0.179 6.179 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.344 0.656 29 H 0.067 0.933 30 H 0.029 0.971 31 H -0.013 1.013 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 0.221 -19.395 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C -0.043 4.043 4 C 0.055 3.945 5 H 0.149 0.851 6 N -0.321 5.321 7 C -0.044 4.044 8 C -0.006 4.006 9 C -0.582 4.582 10 H 0.084 0.916 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.793 3.207 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.046 4.046 18 C -0.243 4.243 19 C -0.242 4.242 20 C -0.091 4.091 21 C -0.126 4.126 22 O -0.075 6.075 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.005 0.995 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.547 -0.241 -19.189 20.277 hybrid contribution -0.836 0.772 1.092 1.577 sum -7.383 0.531 -18.097 19.553 Atomic orbital electron populations 1.22891 0.79587 1.03624 1.00696 1.87915 1.21366 1.27773 1.95500 1.23290 0.93663 0.85507 1.01832 1.20376 0.92031 0.96056 0.86048 0.85084 1.60474 1.54685 1.13520 1.03454 1.21879 0.98692 0.93443 0.90400 1.18903 0.94690 0.95126 0.91853 1.21577 1.45685 0.94939 0.95988 0.91631 1.26018 0.94802 0.97471 1.01571 1.70126 1.46918 1.17740 1.22603 0.85441 0.79071 0.78647 0.77503 1.18955 1.20996 1.19024 1.22327 1.04219 0.80644 0.97446 1.21795 1.07199 1.01256 0.94082 1.21773 1.08696 0.91111 1.02575 1.23236 1.02632 0.99057 0.84166 1.20413 1.04505 0.85555 1.02147 1.84030 1.65468 1.22908 1.35069 0.93678 0.92710 0.88883 0.92181 0.90592 0.83741 0.91442 0.95330 0.99466 0.99136 0.92787 0.81813 0.81432 0.91169 0.87872 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -12.02 9.44 -148.98 -1.41 -13.43 16 3 C 0.04 0.93 5.60 71.98 0.40 1.34 16 4 C 0.17 5.04 2.87 44.17 0.13 5.17 16 5 H 0.13 3.48 7.79 -2.39 -0.02 3.46 16 6 N -0.69 -26.80 6.23 -495.45 -3.08 -29.89 16 7 C 0.08 3.57 5.42 86.30 0.47 4.04 16 8 C 0.03 1.75 5.23 29.85 0.16 1.90 16 9 C -0.54 -31.28 9.11 25.60 0.23 -31.04 16 10 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 11 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 12 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 13 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 C 0.00 0.15 5.72 24.83 0.14 0.29 16 18 C -0.22 -6.04 10.80 22.19 0.24 -5.80 16 19 C -0.22 -5.58 10.81 22.19 0.24 -5.34 16 20 C -0.04 -1.12 7.32 24.83 0.18 -0.93 16 21 C -0.07 -1.28 10.42 71.23 0.74 -0.54 16 22 O -0.18 -6.17 10.52 -2.47 -0.03 -6.19 16 23 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.58 7.35 -2.39 -0.02 1.56 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.34 14.16 7.94 -89.69 -0.71 13.44 16 29 H 0.07 2.76 8.06 -2.39 -0.02 2.74 16 30 H 0.03 1.14 7.36 -2.39 -0.02 1.12 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -71.29 324.04 2.76 -68.53 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.32 Total: 21.09 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 4.64 Total: -28.65 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -2.80 Total: -87.85 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -1.43 Total: -19.62 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.29 2.76 -68.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184691782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.463 kcal (2) G-P(sol) polarization free energy of solvation -71.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds