Wall clock time and date at job start Sun Mar 29 2020 23:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47318 * 270.00267 * 3 2 1 5 5 H 1.48499 * 109.46931 * 30.00410 * 3 2 1 6 6 H 1.48499 * 109.47092 * 150.00002 * 3 2 1 7 7 C 1.40049 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99940 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99637 * 359.97438 * 9 7 2 11 11 N 1.34772 * 119.99932 * 180.02562 * 9 7 2 12 12 C 1.47424 * 125.65189 * 5.39651 * 11 9 7 13 13 C 1.55117 * 104.94371 * 155.96065 * 12 11 9 14 14 C 1.55160 * 101.48603 * 36.78001 * 13 12 11 15 15 C 1.47024 * 125.64540 * 185.35950 * 11 9 7 16 16 H 1.09004 * 109.88319 * 300.50822 * 15 11 9 17 17 C 1.52997 * 110.01566 * 61.60509 * 15 11 9 18 18 C 1.53178 * 109.54610 * 176.53523 * 17 15 11 19 19 C 1.53100 * 109.15398 * 183.24097 * 18 17 15 20 20 O 1.42901 * 109.48967 * 57.47544 * 19 18 17 21 21 C 1.42895 * 114.09848 * 298.88671 * 20 19 18 22 22 C 1.53090 * 109.41740 * 61.15769 * 21 20 19 23 23 H 0.97001 * 120.00001 * 0.02562 * 1 2 3 24 24 H 1.09003 * 110.36986 * 274.67702 * 12 11 9 25 25 H 1.09006 * 110.36512 * 36.88896 * 12 11 9 26 26 H 1.09003 * 110.93980 * 278.78674 * 13 12 11 27 27 H 1.09005 * 111.16663 * 154.86772 * 13 12 11 28 28 H 1.09000 * 110.72368 * 206.26071 * 14 13 12 29 29 H 1.09007 * 110.71708 * 83.16936 * 14 13 12 30 30 H 1.08995 * 109.54167 * 296.71394 * 17 15 11 31 31 H 1.09002 * 109.52130 * 303.05477 * 18 17 15 32 32 H 1.08993 * 109.52268 * 63.24463 * 18 17 15 33 33 H 1.08997 * 109.40801 * 297.48801 * 19 18 17 34 34 H 1.09004 * 109.48008 * 177.50630 * 19 18 17 35 35 H 1.09005 * 109.48324 * 301.17617 * 21 20 19 36 36 H 1.08999 * 109.48292 * 181.14198 * 21 20 19 37 37 H 1.08994 * 109.52755 * 182.48781 * 22 21 20 38 38 H 1.09002 * 109.57437 * 62.32596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6526 0.7001 6 1 3.5382 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9490 -3.6476 -0.0017 12 6 3.4114 -3.7954 0.1121 13 6 3.6264 -5.2248 0.6749 14 6 2.4966 -6.0117 -0.0404 15 6 1.3474 -4.9844 -0.1143 16 1 0.6507 -5.1479 0.7079 17 6 0.6151 -5.1181 -1.4510 18 6 0.0667 -6.5411 -1.5948 19 6 -0.5933 -6.6887 -2.9683 20 8 0.3585 -6.3842 -3.9898 21 6 0.8687 -5.0507 -3.9331 22 6 1.5894 -4.8378 -2.5993 23 1 -0.4850 0.8401 -0.0004 24 1 3.8796 -3.7023 -0.8679 25 1 3.8159 -3.0503 0.7972 26 1 3.4904 -5.2422 1.7563 27 1 4.6073 -5.6127 0.3999 28 1 2.2001 -6.8806 0.5471 29 1 2.8098 -6.3127 -1.0403 30 1 -0.2079 -4.4046 -1.4888 31 1 0.8837 -7.2571 -1.5058 32 1 -0.6696 -6.7283 -0.8133 33 1 -1.4365 -6.0018 -3.0407 34 1 -0.9464 -7.7123 -3.0938 35 1 0.0447 -4.3422 -4.0181 36 1 1.5689 -4.8942 -4.7537 37 1 1.9410 -3.8081 -2.5355 38 1 2.4387 -5.5176 -2.5306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334880063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:29 Heat of formation + Delta-G solvation = -93.691498 kcal Electronic energy + Delta-G solvation = -19999.414274 eV Core-core repulsion = 17034.185445 eV Total energy + Delta-G solvation = -2965.228829 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.73511 -37.95541 -35.70438 -33.35064 -32.49759 -30.80840 -30.28205 -28.21633 -26.12011 -24.15593 -23.23232 -22.01754 -21.22012 -19.51819 -18.21277 -16.62349 -16.03319 -15.72024 -15.50388 -15.11979 -14.44510 -14.34660 -14.21433 -13.52201 -13.28826 -12.65489 -12.53566 -12.23741 -12.03456 -11.75611 -11.50369 -11.32618 -11.12141 -11.06926 -10.92046 -10.67873 -10.46433 -10.30204 -10.22936 -10.11679 -9.99445 -9.61811 -9.22701 -8.86082 -7.60481 -7.14983 -6.20738 -4.65266 3.12085 3.19265 3.22339 4.06860 4.12152 4.52729 4.56551 5.03977 5.11247 5.20595 5.24326 5.33166 5.37990 5.44319 5.56255 5.69037 5.80665 5.85480 5.88883 5.92513 5.96903 6.09304 6.16292 6.20599 6.27082 6.34435 6.42419 6.53179 6.58730 6.69660 6.82435 6.94298 7.42239 7.43601 7.45966 8.11888 8.43488 9.01098 9.52110 10.57245 10.76847 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.007157 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.412225 B = 3911.202165 C = 4449.156681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.574 3.426 10 O -0.575 6.575 11 N -0.638 5.638 12 C 0.119 3.881 13 C -0.136 4.136 14 C -0.131 4.131 15 C 0.154 3.846 16 H 0.055 0.945 17 C -0.096 4.096 18 C -0.148 4.148 19 C 0.063 3.937 20 O -0.390 6.390 21 C 0.061 3.939 22 C -0.141 4.141 23 H 0.268 0.732 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -10.422 -3.067 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.380 3.620 10 O -0.457 6.457 11 N -0.378 5.378 12 C -0.006 4.006 13 C -0.174 4.174 14 C -0.169 4.169 15 C 0.049 3.951 16 H 0.073 0.927 17 C -0.116 4.116 18 C -0.186 4.186 19 C -0.014 4.014 20 O -0.309 6.309 21 C -0.016 4.016 22 C -0.179 4.179 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.937 -10.336 -3.192 11.512 hybrid contribution 0.451 1.058 0.292 1.187 sum 4.388 -9.278 -2.900 10.665 Atomic orbital electron populations 1.70015 1.07013 1.27238 1.35396 1.25710 0.94605 1.00229 0.92651 0.86404 0.80202 0.81519 0.78846 1.19745 1.20457 1.18907 1.20917 0.93567 0.89114 1.54098 0.91380 1.17958 0.86639 0.81163 0.76205 1.90597 1.13876 1.85961 1.55256 1.48729 1.05101 1.04493 1.79454 1.21898 0.84353 0.95195 0.99104 1.22827 0.98096 0.96331 1.00142 1.22764 0.95849 0.97481 1.00787 1.21100 0.93991 0.84604 0.95437 0.92679 1.21486 0.99063 0.95906 0.95154 1.22225 1.00939 0.98009 0.97441 1.22524 0.90989 1.00497 0.87419 1.87841 1.60264 1.31072 1.51723 1.22602 0.97600 0.83439 0.97930 1.22148 0.98510 1.03072 0.94137 0.92137 0.93702 0.91487 0.91431 0.91217 0.91565 0.90725 0.89630 0.91315 0.91252 0.93392 0.89505 0.93279 0.89434 0.90178 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.82 11.83 55.55 0.66 -22.17 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.54 -15.10 8.97 -35.63 -0.32 -15.42 16 8 H 0.07 1.76 6.79 -52.48 -0.36 1.41 16 9 C 0.57 16.10 7.53 -12.99 -0.10 16.00 16 10 O -0.57 -18.26 14.31 5.20 0.07 -18.19 16 11 N -0.64 -14.27 2.28 -164.53 -0.38 -14.65 16 12 C 0.12 2.17 6.42 -2.42 -0.02 2.15 16 13 C -0.14 -1.95 7.11 -24.47 -0.17 -2.12 16 14 C -0.13 -1.91 5.11 -24.89 -0.13 -2.04 16 15 C 0.15 2.92 2.67 -66.95 -0.18 2.74 16 16 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.10 -1.76 2.00 -90.43 -0.18 -1.94 16 18 C -0.15 -2.16 5.22 -26.59 -0.14 -2.30 16 19 C 0.06 0.88 6.84 37.21 0.25 1.13 16 20 O -0.39 -6.14 10.77 -35.23 -0.38 -6.52 16 21 C 0.06 0.96 6.84 37.20 0.25 1.21 16 22 C -0.14 -2.41 5.00 -26.59 -0.13 -2.54 16 23 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.04 5.46 -51.92 -0.28 0.75 16 30 H 0.09 1.93 7.13 -51.93 -0.37 1.56 16 31 H 0.07 0.92 6.88 -51.93 -0.36 0.57 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.59 7.67 -51.93 -0.40 1.19 16 38 H 0.06 1.02 6.06 -51.93 -0.31 0.71 16 LS Contribution 296.34 15.07 4.47 4.47 Total: -1.00 -32.93 296.34 -7.36 -40.29 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.82 Total: 2.52 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.95 Total: -0.79 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.28 Total: -36.81 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.30 Total: -24.71 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.93 -7.36 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334880063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.402 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds